View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1248_low_18 (Length: 283)

Name: NF1248_low_18
Description: NF1248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1248_low_18
NF1248_low_18
[»] chr4 (17 HSPs)
chr4 (4-220)||(7291608-7291822)
chr4 (139-197)||(37970177-37970235)
chr4 (138-197)||(3936626-3936685)
chr4 (137-186)||(27655729-27655778)
chr4 (139-182)||(10069106-10069149)
chr4 (134-197)||(25404654-25404717)
chr4 (139-186)||(44383448-44383495)
chr4 (139-197)||(16451209-16451267)
chr4 (144-186)||(31760251-31760293)
chr4 (137-194)||(6087745-6087802)
chr4 (133-186)||(21623433-21623486)
chr4 (133-194)||(50668334-50668395)
chr4 (145-197)||(1432862-1432914)
chr4 (137-197)||(19854563-19854623)
chr4 (138-194)||(20383487-20383543)
chr4 (144-199)||(39651666-39651722)
chr4 (133-185)||(48251923-48251975)
[»] chr7 (13 HSPs)
chr7 (218-278)||(48846180-48846237)
chr7 (139-197)||(9522912-9522970)
chr7 (150-197)||(37624554-37624601)
chr7 (139-194)||(39280824-39280879)
chr7 (139-197)||(7872751-7872809)
chr7 (139-185)||(27279418-27279464)
chr7 (139-197)||(41029272-41029330)
chr7 (145-197)||(5483336-5483389)
chr7 (133-194)||(7670428-7670489)
chr7 (144-197)||(44410603-44410656)
chr7 (138-194)||(30296332-30296388)
chr7 (142-197)||(36765501-36765557)
chr7 (142-197)||(36769153-36769209)
[»] chr6 (6 HSPs)
chr6 (218-278)||(7016281-7016338)
chr6 (139-197)||(9111047-9111105)
chr6 (137-186)||(12700435-12700484)
chr6 (137-197)||(655752-655812)
chr6 (139-186)||(34701147-34701194)
chr6 (139-167)||(7730664-7730692)
[»] chr3 (14 HSPs)
chr3 (133-194)||(25441506-25441567)
chr3 (138-197)||(13042803-13042862)
chr3 (138-197)||(13050880-13050939)
chr3 (139-197)||(7938724-7938782)
chr3 (140-197)||(38894038-38894095)
chr3 (137-185)||(25289328-25289376)
chr3 (133-185)||(38330767-38330819)
chr3 (137-197)||(39408267-39408327)
chr3 (137-197)||(53996297-53996357)
chr3 (139-197)||(1743993-1744051)
chr3 (133-186)||(31214628-31214681)
chr3 (144-197)||(52575952-52576005)
chr3 (133-185)||(6901469-6901521)
chr3 (133-197)||(19468445-19468509)
[»] chr2 (11 HSPs)
chr2 (140-186)||(29872186-29872232)
chr2 (139-186)||(26999110-26999157)
chr2 (139-197)||(25598565-25598623)
chr2 (144-197)||(34912584-34912638)
chr2 (139-196)||(13196700-13196757)
chr2 (137-198)||(18557105-18557166)
chr2 (137-193)||(833076-833132)
chr2 (152-196)||(18782544-18782588)
chr2 (138-186)||(30799102-30799150)
chr2 (216-278)||(35378176-35378235)
chr2 (138-182)||(37670499-37670543)
[»] chr1 (16 HSPs)
chr1 (139-197)||(16580802-16580860)
chr1 (133-185)||(45190284-45190336)
chr1 (139-194)||(25532973-25533028)
chr1 (139-182)||(44208796-44208839)
chr1 (128-186)||(9265850-9265908)
chr1 (139-197)||(10132447-10132505)
chr1 (137-199)||(15382820-15382882)
chr1 (132-185)||(8253732-8253785)
chr1 (130-183)||(34632160-34632213)
chr1 (133-186)||(50157816-50157869)
chr1 (139-191)||(3509950-3510002)
chr1 (145-197)||(29233977-29234029)
chr1 (150-194)||(32560984-32561028)
chr1 (150-186)||(32950775-32950811)
chr1 (133-197)||(34766854-34766918)
chr1 (150-197)||(45774585-45774633)
[»] chr8 (14 HSPs)
chr8 (145-186)||(22941198-22941239)
chr8 (137-194)||(24195247-24195304)
chr8 (139-185)||(20469326-20469372)
chr8 (136-194)||(40679735-40679793)
chr8 (135-185)||(42932243-42932293)
chr8 (140-193)||(9055412-9055465)
chr8 (128-185)||(19734304-19734361)
chr8 (137-194)||(32421567-32421624)
chr8 (137-194)||(40795375-40795432)
chr8 (132-197)||(42829478-42829543)
chr8 (130-186)||(8148441-8148497)
chr8 (133-197)||(26914074-26914138)
chr8 (150-194)||(27134426-27134470)
chr8 (134-186)||(30427726-30427778)
[»] chr5 (13 HSPs)
chr5 (150-197)||(31708149-31708196)
chr5 (139-197)||(37932330-37932388)
chr5 (137-194)||(12189990-12190047)
chr5 (137-182)||(14188353-14188398)
chr5 (145-194)||(27903119-27903168)
chr5 (136-185)||(31602840-31602889)
chr5 (130-194)||(10704337-10704401)
chr5 (150-194)||(13864355-13864399)
chr5 (137-197)||(32675296-32675356)
chr5 (150-190)||(33645699-33645739)
chr5 (150-197)||(37147000-37147048)
chr5 (137-185)||(37791178-37791226)
chr5 (139-183)||(43359090-43359134)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 9e-76; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 7291822 - 7291608
Alignment:
Q  4 ggaggtgattaatggcaaaattgtttcaataacatttaacttaattttacattatannnnnnnnnnnncgatttagtcttttaagttctgaaatgctatt 103  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||            | ||||||||||||||||||||||||||||||    
T  7291822 ggaggtgattaatggcaaaattgattcaataacatttaacttaattttacattatatttttttttt--caatttagtcttttaagttctgaaatgctatt 7291725  T
Q  104 accgttgttctttcttaaatgggatgaaagtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaaacatat 203  Q
    |||||||| |||||||||||||||||||||||||| |||  ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  7291724 accgttgtcctttcttaaatgggatgaaagtctttatgagtttagttcagttggtataaataatctataatatatgcaaggtcggggattcgaaacatat 7291625  T
Q  204 caccatcaaaaaagatg 220  Q
    |||||||||||||||||    
T  7291624 caccatcaaaaaagatg 7291608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 37970235 - 37970177
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    ||||||||| ||||||||||||||| ||| ||||||||||| || ||||||||||||||    
T  37970235 gtgaacttaattcagttggtataaaaaatgtataatatatgtaaagtcgggggttcgaa 37970177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 3936626 - 3936685
Alignment:
Q  138 tgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    ||||| ||||| ||||||||||| ||||||  ||||||||||||||||| ||||||||||    
T  3936626 tgtgagcttagctcagttggtatgaacaatgcataatatatgcaaggtccggggttcgaa 3936685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 27655729 - 27655778
Alignment:
Q  137 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 186  Q
    |||||||||||||||||||| || |||||||  |||||||||||||||||    
T  27655729 ttgtgaacttagttcagttgatagaaacaatgcataatatatgcaaggtc 27655778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 10069149 - 10069106
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaa 182  Q
    |||||||||| ||||||||||| |||||| ||||||||||||||    
T  10069149 gtgaacttagctcagttggtatgaacaatgtataatatatgcaa 10069106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 25404654 - 25404717
Alignment:
Q  134 tctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||| |||| ||||| |||||| ||| | ||||| ||||||||||| |||||||||||||||||    
T  25404654 tcttcgtgagcttagatcagttagtaaagacaatatataatatatgtaaggtcgggggttcgaa 25404717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 44383448 - 44383495
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 186  Q
    |||||||||| |||||||||||||||||| ||||| ||||| ||||||    
T  44383448 gtgaacttagctcagttggtataaacaatatataaaatatgtaaggtc 44383495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 16451209 - 16451267
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||||||||  |||||||||| |||||||  ||||| |||||||||||||| |||||||    
T  16451209 gtgaacttaactcagttggtacaaacaatgcataatttatgcaaggtcgggagttcgaa 16451267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 31760251 - 31760293
Alignment:
Q  144 cttagttcagttggtataaacaatctataatatatgcaaggtc 186  Q
    ||||| |||||||||||| ||||| ||||||||||||||||||    
T  31760251 cttagctcagttggtatagacaatgtataatatatgcaaggtc 31760293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 6087745 - 6087802
Alignment:
Q  137 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 194  Q
    |||||| ||||| |||||||||||| | |||  ||||||||||||||||| |||||||    
T  6087745 ttgtgagcttagctcagttggtatagataatgcataatatatgcaaggtctggggttc 6087802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 21623486 - 21623433
Alignment:
Q  133 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 186  Q
    ||||| |||||||||||||||||||||   |||||  |||||||||||||||||    
T  21623486 gtcttcgtgaacttagttcagttggtagggacaatgcataatatatgcaaggtc 21623433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 50668334 - 50668395
Alignment:
Q  133 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 194  Q
    ||||| ||||||||| |||||||||||| ||||||  |||||||||| |||||  |||||||    
T  50668334 gtcttcgtgaacttaattcagttggtatgaacaatacataatatatgtaaggttcggggttc 50668395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 1432862 - 1432914
Alignment:
Q  145 ttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||| ||||||||||  |||| | |||||||||||||||||| ||||||||||    
T  1432862 ttagctcagttggtaagaacagtgtataatatatgcaaggtccggggttcgaa 1432914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 19854563 - 19854623
Alignment:
Q  137 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||||| ||||| |||||||||||  |||||  |||||||||||||| || ||||||||||    
T  19854563 ttgtgagcttagctcagttggtatggacaatgcataatatatgcaagatccggggttcgaa 19854623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 20383487 - 20383543
Alignment:
Q  138 tgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 194  Q
    ||||| ||||| |||||||||||  |||||  ||||||||||||||||| |||||||    
T  20383487 tgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtccggggttc 20383543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 39651666 - 39651722
Alignment:
Q  144 cttagttcagttggtataaacaatctataa-tatatgcaaggtcgggggttcgaaac 199  Q
    ||||| ||||||| |||| ||||| ||||| |||||||||||||| |||||||||||    
T  39651666 cttagctcagttgatatagacaatgtataaatatatgcaaggtcgcgggttcgaaac 39651722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 48251975 - 48251923
Alignment:
Q  133 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 185  Q
    |||||| |||| |||| ||||||| ||| |||||| |||||||||||||||||    
T  48251975 gtctttatgaatttagctcagttgatatgaacaatgtataatatatgcaaggt 48251923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 48846237 - 48846180
Alignment:
Q  218 atgatgttgcgacaaacaaagtttcctctagcagcagtacttcatttaacactaagaggct 278  Q
    ||||||||||||||||||||| |||||||||||||   |||||||| ||||||||||||||    
T  48846237 atgatgttgcgacaaacaaagcttcctctagcagc---acttcattgaacactaagaggct 48846180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 9522912 - 9522970
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||||||||| ||||||||||| ||||||  ||||||||||||||||  ||||||||||    
T  9522912 gtgaacttagctcagttggtatgaacaatgcataatatatgcaaggtttggggttcgaa 9522970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 37624554 - 37624601
Alignment:
Q  150 tcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||||||||||  |||||  ||||||||||||||||||||||||||||    
T  37624554 tcagttggtatggacaatgcataatatatgcaaggtcgggggttcgaa 37624601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 39280879 - 39280824
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 194  Q
    |||||||||| ||||||||||  ||||||  ||||||||||||||||| |||||||    
T  39280879 gtgaacttagctcagttggtaagaacaatgcataatatatgcaaggtccggggttc 39280824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 7872809 - 7872751
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||||||||| ||||||||||   |||||  ||||||||||||||||| ||||||||||    
T  7872809 gtgaacttagctcagttggtaaggacaatgcataatatatgcaaggtctggggttcgaa 7872751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 27279464 - 27279418
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggt 185  Q
    ||||||||||||||||| ||||| ||||| ||||||||||| |||||    
T  27279464 gtgaacttagttcagttagtatagacaatgtataatatatgtaaggt 27279418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 41029272 - 41029330
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||| ||||| ||||||||||   ||||| |||||||||||||||||| ||||||||||    
T  41029272 gtgagcttagctcagttggtaaggacaatgtataatatatgcaaggtccggggttcgaa 41029330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 5483336 - 5483389
Alignment:
Q  145 ttagttcagttggtataaacaatctataa-tatatgcaaggtcgggggttcgaa 197  Q
    |||| ||||||| |||||||||| ||||| |||||||||||||| |||||||||    
T  5483336 ttagctcagttgatataaacaatgtataaatatatgcaaggtcgcgggttcgaa 5483389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 7670428 - 7670489
Alignment:
Q  133 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 194  Q
    ||||| |||| ||||| ||||||||| | ||||||  ||||||||||||||||| |||||||    
T  7670428 gtcttcgtgagcttagctcagttggtttgaacaatgcataatatatgcaaggtccggggttc 7670489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 44410603 - 44410656
Alignment:
Q  144 cttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||||||||||||| ||  ||||| |||||||||| ||||||| ||||||||||    
T  44410603 cttagttcagttggcatggacaatgtataatatatacaaggtccggggttcgaa 44410656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 30296332 - 30296388
Alignment:
Q  138 tgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 194  Q
    ||||| ||||| ||||||||||   ||||| |||||||||||||||||| |||||||    
T  30296332 tgtgagcttagctcagttggtaaggacaatgtataatatatgcaaggtctggggttc 30296388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 36765501 - 36765557
Alignment:
Q  142 aacttagttcagttggtataaacaatctataa-tatatgcaaggtcgggggttcgaa 197  Q
    ||||||| ||||||| |||| ||||| ||||| |||||||||||||| |||||||||    
T  36765501 aacttagctcagttgatatagacaatgtataaatatatgcaaggtcgcgggttcgaa 36765557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 36769153 - 36769209
Alignment:
Q  142 aacttagttcagttggtataaacaatctataa-tatatgcaaggtcgggggttcgaa 197  Q
    ||||||| ||||||| |||| ||||| ||||| |||||||||||||| |||||||||    
T  36769153 aacttagctcagttgatatagacaatgtataaatatatgcaaggtcgcgggttcgaa 36769209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 7016281 - 7016338
Alignment:
Q  218 atgatgttgcgacaaacaaagtttcctctagcagcagtacttcatttaacactaagaggct 278  Q
    ||||||||||||||||||||| |||||||||||||   |||||||| ||||||||||||||    
T  7016281 atgatgttgcgacaaacaaagcttcctctagcagc---acttcattgaacactaagaggct 7016338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 9111047 - 9111105
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||| ||||||||||||||||| ||||||  ||||||||||||||||| ||||||||||    
T  9111047 gtgagcttagttcagttggtatgaacaatgcataatatatgcaaggtccggggttcgaa 9111105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 12700484 - 12700435
Alignment:
Q  137 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 186  Q
    |||||| ||||||||||||||||| ||||||  |||||||||||||||||    
T  12700484 ttgtgagcttagttcagttggtatgaacaatgcataatatatgcaaggtc 12700435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 655812 - 655752
Alignment:
Q  137 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||||| ||||| |||||||||||  |||||  ||||||||||||||||| ||||||||||    
T  655812 ttgtgagcttagctcagttggtatcgacaatgcataatatatgcaaggtccggggttcgaa 655752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 34701147 - 34701194
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 186  Q
    |||||||||||||||||||||  ||||||  |||||||||||||||||    
T  34701147 gtgaacttagttcagttggtaggaacaatgcataatatatgcaaggtc 34701194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 167
Target Start/End: Original strand, 7730664 - 7730692
Alignment:
Q  139 gtgaacttagttcagttggtataaacaat 167  Q
    |||||||||||||||||||||||||||||    
T  7730664 gtgaacttagttcagttggtataaacaat 7730692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 25441567 - 25441506
Alignment:
Q  133 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 194  Q
    |||||||||||||||| |||||||||||  |||||  ||||||||||||||||| |||||||    
T  25441567 gtctttgtgaacttagctcagttggtatggacaatgcataatatatgcaaggtctggggttc 25441506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 13042862 - 13042803
Alignment:
Q  138 tgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    ||||| ||||| |||||||||| | ||||| |||||||||||||||||| ||||||||||    
T  13042862 tgtgagcttagctcagttggtaaagacaatttataatatatgcaaggtccggggttcgaa 13042803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 13050939 - 13050880
Alignment:
Q  138 tgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    ||||| ||||| |||||||||| | ||||| |||||||||||||||||| ||||||||||    
T  13050939 tgtgagcttagctcagttggtaaagacaatttataatatatgcaaggtccggggttcgaa 13050880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 7938724 - 7938782
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||| ||||||||||||||||| ||||||  ||||||||| ||||||| ||||||||||    
T  7938724 gtgagcttagttcagttggtatgaacaatgcataatatatacaaggtctggggttcgaa 7938782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 38894038 - 38894095
Alignment:
Q  140 tgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    ||||||||| ||||||| ||| |||||| ||||| |||||||||||| ||||||||||    
T  38894038 tgaacttagctcagttgatatgaacaatgtataaaatatgcaaggtccggggttcgaa 38894095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 25289376 - 25289328
Alignment:
Q  137 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 185  Q
    |||||||||||| |||||||||| ||||||| ||||||||||| |||||    
T  25289376 ttgtgaacttagctcagttggtaaaaacaatgtataatatatgtaaggt 25289328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 38330819 - 38330767
Alignment:
Q  133 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 185  Q
    ||||| |||| ||||| ||| |||||||||||||| |||||||||||||||||    
T  38330819 gtcttcgtgagcttagctcaattggtataaacaatatataatatatgcaaggt 38330767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 39408327 - 39408267
Alignment:
Q  137 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||||| ||||||||| ||| | |||| ||| |||||||||||||||||| ||||||||||    
T  39408327 ttgtgagcttagttcaattgatttaaataatgtataatatatgcaaggtctggggttcgaa 39408267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 53996297 - 53996357
Alignment:
Q  137 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||||| ||||| |||||||||||  |||||  ||||||||||||||||| ||||||||||    
T  53996297 ttgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtctggggttcgaa 53996357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 1744051 - 1743993
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    ||||||||| ||||||||||||  |||||  ||||||||||||||||  ||||||||||    
T  1744051 gtgaacttaattcagttggtatggacaatacataatatatgcaaggttcggggttcgaa 1743993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 31214628 - 31214681
Alignment:
Q  133 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 186  Q
    |||||||||||||||||| |||||||| ||| |||  |||||||||| ||||||    
T  31214628 gtctttgtgaacttagttaagttggtagaaataatgcataatatatgtaaggtc 31214681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 52575952 - 52576005
Alignment:
Q  144 cttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    ||||| ||||||||||| ||||||  |||| |||||||||||| ||||||||||    
T  52575952 cttagctcagttggtatgaacaatgcataaaatatgcaaggtctggggttcgaa 52576005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 6901521 - 6901469
Alignment:
Q  133 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 185  Q
    ||||| |||| ||||| ||||||||||  |||||| |||||||||||||||||    
T  6901521 gtcttagtgagcttagctcagttggtaggaacaatgtataatatatgcaaggt 6901469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 19468445 - 19468509
Alignment:
Q  133 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||||||||| ||||  |||||||||||  |||||  ||||||||||||||||| | ||||||||    
T  19468445 gtctttgtgagcttaactcagttggtatggacaatgcataatatatgcaaggtccgtggttcgaa 19468509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 29872232 - 29872186
Alignment:
Q  140 tgaacttagttcagttggtataaacaatctataatatatgcaaggtc 186  Q
    ||||||||||||||||||||| ||||||  |||||||||||||||||    
T  29872232 tgaacttagttcagttggtatgaacaatacataatatatgcaaggtc 29872186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 26999110 - 26999157
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 186  Q
    ||||||||||||||||||||| | |||||  |||||||||||||||||    
T  26999110 gtgaacttagttcagttggtagagacaatgcataatatatgcaaggtc 26999157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 25598623 - 25598565
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||||||||| |||||||||||  |||||  |||||||||||||||||  |||||||||    
T  25598623 gtgaacttagctcagttggtatggacaatgcataatatatgcaaggtccagggttcgaa 25598565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 34912584 - 34912638
Alignment:
Q  144 cttagttcagttggtataaacaatctataa-tatatgcaaggtcgggggttcgaa 197  Q
    ||||||||||||| |||| ||||| ||||| |||||||||||||| |||||||||    
T  34912584 cttagttcagttgatatagacaatgtataaatatatgcaaggtcgcgggttcgaa 34912638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 13196700 - 13196757
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcga 196  Q
    |||||||||  ||||||||||| ||||||  ||||||||||||||||  |||||||||    
T  13196700 gtgaacttaactcagttggtatgaacaatgcataatatatgcaaggttcggggttcga 13196757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 18557105 - 18557166
Alignment:
Q  137 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaaa 198  Q
    |||||||||||| ||||||||||  |||| | |||||||| ||||||||| | |||||||||    
T  18557105 ttgtgaacttagctcagttggtaataacagtgtataatatctgcaaggtctgaggttcgaaa 18557166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 833132 - 833076
Alignment:
Q  137 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggtt 193  Q
    ||||||||| || |||||||||||  |||||  ||||||||||||||||| ||||||    
T  833132 ttgtgaactcagctcagttggtatggacaatgcataatatatgcaaggtctggggtt 833076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 18782588 - 18782544
Alignment:
Q  152 agttggtataaacaatctataatatatgcaaggtcgggggttcga 196  Q
    |||||||| |||||||  ||||||||||||||||| |||||||||    
T  18782588 agttggtagaaacaatgcataatatatgcaaggtctggggttcga 18782544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 30799150 - 30799102
Alignment:
Q  138 tgtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 186  Q
    |||||||||| ||||||||||| |||||||  |||||||||| ||||||    
T  30799150 tgtgaacttatttcagttggtagaaacaatgcataatatatgtaaggtc 30799102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 35378235 - 35378176
Alignment:
Q  216 agatgatgttgcgacaaacaaagtttcctctagcagcagtacttcatttaacactaagaggct 278  Q
    |||| ||| |||||||||||||| | |||||||||||   |||||||| ||||||||||||||    
T  35378235 agataatgctgcgacaaacaaagctgcctctagcagc---acttcattgaacactaagaggct 35378176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 37670543 - 37670499
Alignment:
Q  138 tgtgaacttagttcagttggtataaacaatctataatatatgcaa 182  Q
    ||||||||||| ||||||||||  |||||| ||||||||||||||    
T  37670543 tgtgaacttagctcagttggtaagaacaatgtataatatatgcaa 37670499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 16580860 - 16580802
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||| |||| ||||||||||||  ||||| |||||||||||||||||| ||||||||||    
T  16580860 gtgagcttaattcagttggtatggacaatgtataatatatgcaaggtctggggttcgaa 16580802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 45190336 - 45190284
Alignment:
Q  133 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 185  Q
    ||||| ||||||||||||||||||||||  |||||  ||||||||||||||||    
T  45190336 gtcttcgtgaacttagttcagttggtatggacaatgcataatatatgcaaggt 45190284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 25532973 - 25533028
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 194  Q
    |||| |||||||||||||||||  |||||  ||||||||||||||||| |||||||    
T  25532973 gtgagcttagttcagttggtatggacaatgcataatatatgcaaggtccggggttc 25533028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 44208839 - 44208796
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaa 182  Q
    |||||| ||| |||||||||||||||||| ||||||||||||||    
T  44208839 gtgaacatagctcagttggtataaacaatatataatatatgcaa 44208796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 9265908 - 9265850
Alignment:
Q  128 tgaaagtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 186  Q
    |||||||| |||||||||||  |||||||||||  ||||| ||||||| ||||||||||    
T  9265908 tgaaagtcattgtgaacttaactcagttggtatggacaatgtataatacatgcaaggtc 9265850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 10132505 - 10132447
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||||||||| ||||||||||   |||||  ||||||||||||||||| ||||||||||    
T  10132505 gtgaacttagatcagttggtaaggacaatgcataatatatgcaaggtctggggttcgaa 10132447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 15382882 - 15382820
Alignment:
Q  137 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaaac 199  Q
    |||||| ||||  ||||||| ||| |||||| |||||||||||||||||| | ||||||||||    
T  15382882 ttgtgagcttaactcagttgatatgaacaatgtataatatatgcaaggtccgaggttcgaaac 15382820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 8253732 - 8253785
Alignment:
Q  132 agtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 185  Q
    ||||||||||| ||||| |||||||||||  |||||  ||||||||||||||||    
T  8253732 agtctttgtgagcttagctcagttggtatggacaatgcataatatatgcaaggt 8253785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 34632160 - 34632213
Alignment:
Q  130 aaagtctttgtgaacttagttcagttggtataaacaatctataatatatgcaag 183  Q
    |||||| | |||| ||||| |||||||||||| ||||| |||||||||||||||    
T  34632160 aaagtcctcgtgagcttagctcagttggtatagacaatgtataatatatgcaag 34632213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 50157869 - 50157816
Alignment:
Q  133 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 186  Q
    |||||||||||| |||||||| || | |  ||||||||||||||||||||||||    
T  50157869 gtctttgtgaacatagttcagctgatttggacaatctataatatatgcaaggtc 50157816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 3510002 - 3509950
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcggggg 191  Q
    |||||||||| |||||||||||  |||||  ||||||||||||||||| ||||    
T  3510002 gtgaacttagctcagttggtatggacaatgcataatatatgcaaggtccgggg 3509950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 29234029 - 29233977
Alignment:
Q  145 ttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||| |||||||||||| |||||  |||| |||||||||||| ||||||||||    
T  29234029 ttagctcagttggtatagacaatgcataaaatatgcaaggtctggggttcgaa 29233977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 32560984 - 32561028
Alignment:
Q  150 tcagttggtataaacaatctataatatatgcaaggtcgggggttc 194  Q
    |||||||||||  ||||| |||||||||||||||||| |||||||    
T  32560984 tcagttggtatggacaatgtataatatatgcaaggtccggggttc 32561028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 32950811 - 32950775
Alignment:
Q  150 tcagttggtataaacaatctataatatatgcaaggtc 186  Q
    ||||||||||||||||||  |||||||||||||||||    
T  32950811 tcagttggtataaacaatgcataatatatgcaaggtc 32950775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 34766854 - 34766918
Alignment:
Q  133 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    ||||| |||| ||||  |||||||||||  ||||| ||||||| |||||||||| ||||||||||    
T  34766854 gtcttcgtgagcttaactcagttggtatggacaatgtataatacatgcaaggtctggggttcgaa 34766918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 45774585 - 45774633
Alignment:
Q  150 tcagttggtataaacaatctataata-tatgcaaggtcgggggttcgaa 197  Q
    ||||||||||||||||||  |||||| ||||||||||| ||||||||||    
T  45774585 tcagttggtataaacaatacataataatatgcaaggtccggggttcgaa 45774633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 22941198 - 22941239
Alignment:
Q  145 ttagttcagttggtataaacaatctataatatatgcaaggtc 186  Q
    |||||||||||||||| |||||| ||||||||||||||||||    
T  22941198 ttagttcagttggtatgaacaatttataatatatgcaaggtc 22941239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 24195247 - 24195304
Alignment:
Q  137 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 194  Q
    |||||||||||| ||||||| ||| ||||||  ||||||||||||||||| |||||||    
T  24195247 ttgtgaacttagctcagttgatatgaacaatacataatatatgcaaggtccggggttc 24195304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 20469372 - 20469326
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggt 185  Q
    |||| ||||| ||||||||||||||||||  ||||||||||||||||    
T  20469372 gtgagcttagatcagttggtataaacaatgcataatatatgcaaggt 20469326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 40679793 - 40679735
Alignment:
Q  136 tttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 194  Q
    ||||||||||||| |||||||||||   |||| ||||| |||||||||||| |||||||    
T  40679793 tttgtgaacttagctcagttggtatggtcaatatataaaatatgcaaggtccggggttc 40679735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 42932293 - 42932243
Alignment:
Q  135 ctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 185  Q
    ||||||||  |||||||| |||||||||||||| ||||||||||| |||||    
T  42932293 ctttgtgagtttagttcacttggtataaacaatgtataatatatgtaaggt 42932243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 9055465 - 9055412
Alignment:
Q  140 tgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggtt 193  Q
    ||||||||| ||||||| || ||| ||| |||||||||||||||||| ||||||    
T  9055465 tgaacttagctcagttgataaaaataatgtataatatatgcaaggtctggggtt 9055412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 19734304 - 19734361
Alignment:
Q  128 tgaaagtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 185  Q
    |||||||| |||| ||||||| ||||||||| | ||||||  ||||||||||||||||    
T  19734304 tgaaagtccttgtaaacttagctcagttggtttgaacaatacataatatatgcaaggt 19734361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 32421567 - 32421624
Alignment:
Q  137 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 194  Q
    |||||| ||||  |||||||||||  ||||| |||||||||||||||||| |||||||    
T  32421567 ttgtgagcttaactcagttggtatggacaatatataatatatgcaaggtccggggttc 32421624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 40795375 - 40795432
Alignment:
Q  137 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 194  Q
    |||||| ||||  ||||||||||| ||||||  ||||||||||||||||| |||||||    
T  40795375 ttgtgagcttaactcagttggtatgaacaatacataatatatgcaaggtccggggttc 40795432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 42829543 - 42829478
Alignment:
Q  132 agtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    ||||||||||  ||||| |||||||||||  ||||  ||||| |||||||||||| ||||||||||    
T  42829543 agtctttgtgggcttagctcagttggtatggacaaaatataaaatatgcaaggtctggggttcgaa 42829478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 8148497 - 8148441
Alignment:
Q  130 aaagtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 186  Q
    |||||||| |||| ||||| ||| |||||||  ||||| ||||||||||||||||||    
T  8148497 aaagtcttcgtgatcttagctcaattggtatggacaatgtataatatatgcaaggtc 8148441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 26914138 - 26914074
Alignment:
Q  133 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    ||||| |||| ||||||||||||| |||| | ||| ||||| ||||| |||||| ||||||||||    
T  26914138 gtcttcgtgagcttagttcagttgctatagataatgtataaaatatgtaaggtctggggttcgaa 26914074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 27134470 - 27134426
Alignment:
Q  150 tcagttggtataaacaatctataatatatgcaaggtcgggggttc 194  Q
    ||||||||||| |||||| |||||||||||||| ||| |||||||    
T  27134470 tcagttggtatgaacaatgtataatatatgcaaagtccggggttc 27134426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 30427726 - 30427778
Alignment:
Q  134 tctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 186  Q
    ||||||||| ||||| |||||||||||  |||||  |||||||||||||||||    
T  30427726 tctttgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtc 30427778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 31708196 - 31708149
Alignment:
Q  150 tcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    ||||||||||| ||||||  ||||||||||||||||| ||||||||||    
T  31708196 tcagttggtatgaacaatgcataatatatgcaaggtctggggttcgaa 31708149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 37932330 - 37932388
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||| ||||| |||||||||||  |||||  ||||||||||||||||| ||||||||||    
T  37932330 gtgagcttagctcagttggtatggacaatgcataatatatgcaaggtccggggttcgaa 37932388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 12189990 - 12190047
Alignment:
Q  137 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 194  Q
    |||||||||||| | |||||||||  |||||  |||||||||| ||||||||||||||    
T  12189990 ttgtgaacttagcttagttggtatggacaatacataatatatgtaaggtcgggggttc 12190047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 14188398 - 14188353
Alignment:
Q  137 ttgtgaacttagttcagttggtataaacaatctataatatatgcaa 182  Q
    |||||| |||||||||||||||||  |||||| |||||||||||||    
T  14188398 ttgtgagcttagttcagttggtatggacaatccataatatatgcaa 14188353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 27903119 - 27903168
Alignment:
Q  145 ttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 194  Q
    |||||||||||||||| ||||||  ||||||||||||||||  |||||||    
T  27903119 ttagttcagttggtatgaacaatgcataatatatgcaaggttcggggttc 27903168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 31602889 - 31602840
Alignment:
Q  136 tttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 185  Q
    ||||||| ||||| ||||||||||| ||||||  ||||||||||||||||    
T  31602889 tttgtgaccttagctcagttggtatgaacaatgcataatatatgcaaggt 31602840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 10704401 - 10704337
Alignment:
Q  130 aaagtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 194  Q
    |||||| |||||| ||||| |||||||||||  |||||  |||| |||||||||||| |||||||    
T  10704401 aaagtccttgtgagcttagctcagttggtatggacaatgcataaaatatgcaaggtccggggttc 10704337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 13864355 - 13864399
Alignment:
Q  150 tcagttggtataaacaatctataatatatgcaaggtcgggggttc 194  Q
    ||||||||||| ||||||  ||||||||||||||||| |||||||    
T  13864355 tcagttggtatgaacaatacataatatatgcaaggtccggggttc 13864399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 32675356 - 32675296
Alignment:
Q  137 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 197  Q
    |||||| |||||||||||||| |  ||||||  |||||||||||||||||  |||||||||    
T  32675356 ttgtgagcttagttcagttggcaagaacaatgcataatatatgcaaggtctagggttcgaa 32675296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 33645739 - 33645699
Alignment:
Q  150 tcagttggtataaacaatctataatatatgcaaggtcgggg 190  Q
    |||||||||||  ||||| ||||||||||||||||||||||    
T  33645739 tcagttggtatggacaatgtataatatatgcaaggtcgggg 33645699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 37147000 - 37147048
Alignment:
Q  150 tcagttggtataaacaatctataa-tatatgcaaggtcgggggttcgaa 197  Q
    ||||||| |||||||||| ||||| |||||||||||||| |||||||||    
T  37147000 tcagttgatataaacaatgtataaatatatgcaaggtcgcgggttcgaa 37147048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 37791226 - 37791178
Alignment:
Q  137 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 185  Q
    |||||| |||||||||||||||| ||||||   ||||||||||||||||    
T  37791226 ttgtgagcttagttcagttggtagaaacaacgcataatatatgcaaggt 37791178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 43359134 - 43359090
Alignment:
Q  139 gtgaacttagttcagttggtataaacaatctataatatatgcaag 183  Q
    |||||||||||| |||||||| ||||||| |||||||||| ||||    
T  43359134 gtgaacttagtttagttggtagaaacaatgtataatatatacaag 43359090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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