View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1248_low_5 (Length: 461)

Name: NF1248_low_5
Description: NF1248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1248_low_5
NF1248_low_5
[»] scaffold0314 (2 HSPs)
scaffold0314 (185-432)||(19786-20035)
scaffold0314 (97-177)||(19384-19464)
[»] chr1 (7 HSPs)
chr1 (43-96)||(46312065-46312118)
chr1 (49-100)||(14512669-14512720)
chr1 (47-96)||(2999491-2999540)
chr1 (48-100)||(46524536-46524588)
chr1 (48-96)||(46525852-46525900)
chr1 (47-97)||(3000222-3000272)
chr1 (43-97)||(46313279-46313333)
[»] chr2 (7 HSPs)
chr2 (43-97)||(10851912-10851966)
chr2 (43-98)||(10853150-10853205)
chr2 (48-97)||(27552451-27552500)
chr2 (43-96)||(28851677-28851730)
chr2 (43-98)||(45412333-45412388)
chr2 (43-97)||(45413482-45413536)
chr2 (48-96)||(27553817-27553865)
[»] chr7 (6 HSPs)
chr7 (48-97)||(9805436-9805485)
chr7 (48-96)||(35080283-35080331)
chr7 (48-97)||(35081611-35081660)
chr7 (48-97)||(23621991-23622040)
chr7 (222-270)||(38847031-38847079)
chr7 (43-97)||(12961983-12962037)
[»] chr4 (12 HSPs)
chr4 (43-96)||(33997901-33997954)
chr4 (43-97)||(8747690-8747744)
chr4 (43-97)||(8749051-8749105)
chr4 (43-97)||(40168638-40168692)
chr4 (48-97)||(8896963-8897012)
chr4 (43-96)||(55986314-55986367)
chr4 (43-95)||(40169784-40169836)
chr4 (44-107)||(53312547-53312610)
chr4 (222-272)||(5119631-5119681)
chr4 (224-270)||(35087715-35087761)
chr4 (43-93)||(55984768-55984818)
chr4 (43-100)||(31435857-31435913)
[»] chr3 (10 HSPs)
chr3 (43-96)||(26722533-26722586)
chr3 (44-100)||(32831096-32831152)
chr3 (43-96)||(10584087-10584140)
chr3 (43-100)||(26723909-26723966)
chr3 (43-96)||(32829740-32829793)
chr3 (49-98)||(51220613-51220662)
chr3 (51-97)||(53157189-53157234)
chr3 (48-97)||(21326319-21326368)
chr3 (45-86)||(25154444-25154485)
chr3 (43-96)||(51219462-51219515)
[»] chr6 (7 HSPs)
chr6 (43-99)||(20410222-20410278)
chr6 (43-97)||(20409066-20409120)
chr6 (48-99)||(16864502-16864553)
chr6 (43-97)||(16859335-16859389)
chr6 (43-93)||(22417661-22417711)
chr6 (43-100)||(12181591-12181648)
chr6 (48-96)||(6978147-6978195)
[»] chr8 (5 HSPs)
chr8 (43-97)||(38612218-38612272)
chr8 (43-97)||(38613422-38613476)
chr8 (47-100)||(13883877-13883930)
chr8 (229-292)||(28347526-28347589)
chr8 (225-270)||(19991558-19991603)
[»] chr5 (10 HSPs)
chr5 (43-97)||(3597322-3597376)
chr5 (43-100)||(124534-124591)
chr5 (43-96)||(3598927-3598980)
chr5 (43-96)||(5504141-5504194)
chr5 (43-97)||(121348-121402)
chr5 (43-97)||(24242016-24242070)
chr5 (48-96)||(17415699-17415747)
chr5 (66-107)||(14189653-14189694)
chr5 (43-96)||(17414544-17414597)
chr5 (43-99)||(8061853-8061909)


Alignment Details
Target: scaffold0314 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 185 - 432
Target Start/End: Original strand, 19786 - 20035
Alignment:
Q  185 atgcatccattattcaggcacacaa--caaaattttaccctagagctagaaagtctattttcttgggttacaagtcaggttacaaaggttatgtcttatt 282  Q
    |||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19786 atgcatccattattcaggcacacaaaacaaaactttaccctagagctagaaagtctattttcttgggttacaagtcaggttacaaaggttatgtcttatt 19885  T
Q  283 tgatcctcattctcaaaaccttttcatttttagaaatgttgtttttgatgaacaaataatcccacatgtcactaatccatcttttccaacctccgattgg 382  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19886 tgatcctcattctcaaaaccttttcatttttagaaatgttatttttgatgaacaaataatcccacatgtcactaatccatcttttccaacctccgattgg 19985  T
Q  383 aactataaaatctgctatttcgtactttgaagctgtttgcaccaaatttt 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19986 aactataaaatctgctatttcgtactttgaagctgtttgcaccaaatttt 20035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 19384 - 19464
Alignment:
Q  97 ttttctttattaacttagttcctacatctttactcaatcacaaatctccttttcaaaatctttttcaaagtctttggttat 177  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19384 ttttcttaattaacatagttactacatctttactcaatcacaaatctccttttcaaaatctttttcaaagtctttggttat 19464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 46312118 - 46312065
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 96  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46312118 ggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 46312065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 14512669 - 14512720
Alignment:
Q  49 aaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctttt 100  Q
    |||||||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  14512669 aaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcctttt 14512720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 2999540 - 2999491
Alignment:
Q  47 tcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 96  Q
    |||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  2999540 tcaaaatcgcaacattgacaaagttagagggtcaaaactgtagtttagcc 2999491  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 46524588 - 46524536
Alignment:
Q  48 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctttt 100  Q
    |||||| |||||||||||||| |||||||| |||||||||||||||| |||||    
T  46524588 caaaattgcaacattggtaaacttagggggccaaaactgtagtttagtctttt 46524536  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 46525852 - 46525900
Alignment:
Q  48 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 96  Q
    ||||||||||||||||| ||| |||||||| ||||||||||| ||||||    
T  46525852 caaaatcgcaacattggcaaacttagggggccaaaactgtagattagcc 46525900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 3000222 - 3000272
Alignment:
Q  47 tcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    ||||||||||||||||   ||| ||| ||||||||||||||||||||||||    
T  3000222 tcaaaatcgcaacattaacaaaattaaggggtcaaaactgtagtttagcct 3000272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 46313279 - 46313333
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    |||| |||||||||| | |||  ||||||||||||||||||||| ||||||||||    
T  46313279 ggggccaaaatcgcacctttgtgaaagttagggggtcaaaactgcagtttagcct 46313333  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 10851966 - 10851912
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10851966 ggggttaaaatcgcaacattgataaagttagggggtcaaaactgtagtttagcct 10851912  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 10853150 - 10853205
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctt 98  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||    
T  10853150 ggggtcaaaatcgcaacattgataaagttaaggggtcaaaactgtagtttatcctt 10853205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 27552500 - 27552451
Alignment:
Q  48 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  27552500 caaaatcgcaacattggcaaatttagggggtcaaaactgtagtttagcct 27552451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 28851677 - 28851730
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 96  Q
    |||||||||||||||||||||  ||||||||||||||||||||| |||||||||    
T  28851677 ggggtcaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcc 28851730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 45412388 - 45412333
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctt 98  Q
    ||||||||||||||| |||||  ||||||||||||||||||||| |||||||||||    
T  45412388 ggggtcaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcctt 45412333  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 45413482 - 45413536
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    |||| |||||||||| |||||  ||||||||||||||||||||| ||||||||||    
T  45413482 ggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcct 45413536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 27553817 - 27553865
Alignment:
Q  48 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 96  Q
    ||||||||||||||| | ||| ||||||||| |||||||||||||||||    
T  27553817 caaaatcgcaacattagcaaacttagggggttaaaactgtagtttagcc 27553865  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 9805436 - 9805485
Alignment:
Q  48 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  9805436 caaaatcgcaacattggcaaacttagggggtcaaaactgtagtttagcct 9805485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 35080331 - 35080283
Alignment:
Q  48 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 96  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  35080331 caaaatcgcaacattggcaaacttagggggtcaaaactgtagtttagcc 35080283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 35081611 - 35081660
Alignment:
Q  48 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    ||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  35081611 caaaatcgcaacattgacaaacttagggggtcaaaactgtagtttagcct 35081660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 23621991 - 23622040
Alignment:
Q  48 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    ||||||||||||||||| ||| ||||| || |||||||||||||||||||    
T  23621991 caaaatcgcaacattggcaaacttaggaggccaaaactgtagtttagcct 23622040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 38847079 - 38847031
Alignment:
Q  222 ctagagctagaaagtctattttcttgggttacaagtcaggttacaaagg 270  Q
    ||||||| ||||||||| |||||||||| ||||||||||||| ||||||    
T  38847079 ctagagccagaaagtctgttttcttgggatacaagtcaggtttcaaagg 38847031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 12962037 - 12961983
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    |||| |||||||||| |||||  ||||||||||||| ||||||| ||||||||||    
T  12962037 ggggccaaaatcgcaccattgtgaaagttagggggttaaaactgcagtttagcct 12961983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 33997901 - 33997954
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 96  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  33997901 ggggtcaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 33997954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 8747744 - 8747690
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    |||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  8747744 ggggccaaaatcgcaacattggcaaacttaaggggtcaaaactgtagtttagcct 8747690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 8749051 - 8749105
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    |||| ||||||||||||||||| ||| ||| |||||||||| |||||||||||||    
T  8749051 ggggccaaaatcgcaacattggcaaacttaaggggtcaaaagtgtagtttagcct 8749105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 40168692 - 40168638
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    |||| |||||||||| |||||  ||||||||||||||||||||| ||||||||||    
T  40168692 ggggccaaaatcgcaccattgtaaaagttagggggtcaaaactgcagtttagcct 40168638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 8896963 - 8897012
Alignment:
Q  48 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    |||||||| |||||||| ||| |||||| |||||||||||||||||||||    
T  8896963 caaaatcgtaacattggcaaacttagggagtcaaaactgtagtttagcct 8897012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 55986314 - 55986367
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 96  Q
    ||||||||||||||| |||||  ||||||||||||| ||||||| |||||||||    
T  55986314 ggggtcaaaatcgcaccattgtgaaagttagggggttaaaactgcagtttagcc 55986367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 40169784 - 40169836
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagc 95  Q
    |||| |||||||||| |||||  ||||||||||||||||||||| ||||||||    
T  40169784 ggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagc 40169836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 53312547 - 53312610
Alignment:
Q  44 gggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagccttttctttatt 107  Q
    |||||||||||||||| | |  ||||||||||||| ||||||||  || |||||||||||||||    
T  53312547 gggtcaaaatcgcaacttcgtgaaagttagggggtgaaaactgttattaagccttttctttatt 53312610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 5119631 - 5119681
Alignment:
Q  222 ctagagctagaaagtctattttcttgggttacaagtcaggttacaaaggtt 272  Q
    ||||||||||||| ||| ||||||| || ||||||||||| ||||||||||    
T  5119631 ctagagctagaaaatctgttttcttagggtacaagtcaggatacaaaggtt 5119681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 35087715 - 35087761
Alignment:
Q  224 agagctagaaagtctattttcttgggttacaagtcaggttacaaagg 270  Q
    ||||||| |||| | |||||||||||||||||||| |||||||||||    
T  35087715 agagctaaaaagacaattttcttgggttacaagtctggttacaaagg 35087761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 55984818 - 55984768
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagttta 93  Q
    ||||||||||||||| |||||  ||||||||||||| ||||||| ||||||    
T  55984818 ggggtcaaaatcgcaccattgtgaaagttagggggttaaaactgcagttta 55984768  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 31435857 - 31435913
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctttt 100  Q
    |||||||||||||||||||||| |||  ||  ||| ||||||||||||||||||||||    
T  31435857 ggggtcaaaatcgcaacattggcaaacata-agggccaaaactgtagtttagcctttt 31435913  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 26722586 - 26722533
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 96  Q
    |||| ||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  26722586 ggggccaaaatcgcaacattggtaaacttagggggccaaaactgtagtttagcc 26722533  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 32831096 - 32831152
Alignment:
Q  44 gggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctttt 100  Q
    ||||||||||||||||||||  |||  ||||||||||||||||||||||||||||||    
T  32831096 gggtcaaaatcgcaacattgacaaacatagggggtcaaaactgtagtttagcctttt 32831152  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 10584087 - 10584140
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 96  Q
    |||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||    
T  10584087 ggggccaaaatcgcaacattggcaaacttaggggatcaaaactgtagtttagcc 10584140  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 26723909 - 26723966
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctttt 100  Q
    |||| |||||| |||||||| ||||| |||||||| ||||||||||||||||||||||    
T  26723909 ggggccaaaattgcaacattagtaaacttagggggccaaaactgtagtttagcctttt 26723966  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 32829793 - 32829740
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 96  Q
    |||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  32829793 ggggccaaaatcgcaaaattggcaaacttagggggtcaaaactgtagtttagcc 32829740  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 51220613 - 51220662
Alignment:
Q  49 aaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctt 98  Q
    |||||||||||||||  ||| ||| |||||||||||||||||||||||||    
T  51220613 aaaatcgcaacattgacaaacttaaggggtcaaaactgtagtttagcctt 51220662  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 53157189 - 53157234
Alignment:
Q  51 aatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    |||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  53157189 aatcgcaacattggcaaacttagggg-tcaaaactgtagtttagcct 53157234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 21326368 - 21326319
Alignment:
Q  48 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    |||||| |||| ||||||||| ||| |||||||||| |||||||||||||    
T  21326368 caaaattgcaatattggtaaacttaaggggtcaaaagtgtagtttagcct 21326319  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 25154444 - 25154485
Alignment:
Q  45 ggtcaaaatcgcaacattggtaaagttagggggtcaaaactg 86  Q
    |||||||||| |||| |||||||||||||||||| |||||||    
T  25154444 ggtcaaaatcacaactttggtaaagttagggggttaaaactg 25154485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 51219515 - 51219462
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 96  Q
    |||| |||||| |||||||||  ||| ||||| |||||||||||||||||||||    
T  51219515 ggggccaaaattgcaacattgacaaacttaggaggtcaaaactgtagtttagcc 51219462  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 20410222 - 20410278
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagccttt 99  Q
    ||||||||||||||| |||||  ||||||||||||||||||||| ||||||||||||    
T  20410222 ggggtcaaaatcgcaccattgtaaaagttagggggtcaaaactgcagtttagccttt 20410278  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 20409120 - 20409066
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    |||| |||||||||| |||||  ||||||||||||||||||||| ||||||||||    
T  20409120 ggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcct 20409066  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 16864502 - 16864553
Alignment:
Q  48 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagccttt 99  Q
    |||||||||| |||||  ||||||||||||| ||||||| ||||||||||||    
T  16864502 caaaatcgcaccattgtaaaagttagggggttaaaactgcagtttagccttt 16864553  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 16859389 - 16859335
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    ||||||||||||||| |||||  ||||||||||||| |||| || ||||||||||    
T  16859389 ggggtcaaaatcgcaccattgtgaaagttagggggttaaaattgcagtttagcct 16859335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 22417711 - 22417661
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagttta 93  Q
    |||| |||||||| |||||| | ||| ||||||||||||||||||||||||    
T  22417711 ggggccaaaatcgtaacattagcaaacttagggggtcaaaactgtagttta 22417661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 12181648 - 12181591
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctttt 100  Q
    |||| ||||||| |||||||   ||||||||| ||||||||||| |||||||||||||    
T  12181648 ggggccaaaatcccaacatttacaaagttaggaggtcaaaactgcagtttagcctttt 12181591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 6978147 - 6978195
Alignment:
Q  48 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 96  Q
    |||||||||| |||||  ||||||||||||| ||||||| |||||||||    
T  6978147 caaaatcgcaccattgtgaaagttagggggttaaaactgcagtttagcc 6978195  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 38612272 - 38612218
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    |||| ||||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  38612272 ggggccaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcct 38612218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 38613422 - 38613476
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    |||| ||||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  38613422 ggggccaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcct 38613476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 13883877 - 13883930
Alignment:
Q  47 tcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctttt 100  Q
    |||||||||||||||||  ||| ||| |||||||||||||||||||||||||||    
T  13883877 tcaaaatcgcaacattgacaaacttaaggggtcaaaactgtagtttagcctttt 13883930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 292
Target Start/End: Complemental strand, 28347589 - 28347526
Alignment:
Q  229 tagaaagtctattttcttgggttacaagtcaggttacaaaggttatgtcttatttgatcctcat 292  Q
    |||||||||  |||||||||||||||||||||  | |||||| |||||||||||||||| ||||    
T  28347589 tagaaagtcagttttcttgggttacaagtcagaattcaaaggatatgtcttatttgatcttcat 28347526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 19991558 - 19991603
Alignment:
Q  225 gagctagaaagtctattttcttgggttacaagtcaggttacaaagg 270  Q
    |||||||||||| | ||||||||||||||||||||||||| |||||    
T  19991558 gagctagaaagtttgttttcttgggttacaagtcaggttataaagg 19991603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 3597376 - 3597322
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    |||| ||||||||||||||| ||||| |||||||| |||||||||||||||||||    
T  3597376 ggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcct 3597322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 124534 - 124591
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctttt 100  Q
    |||| ||||||||||||||||| ||| ||| | |||||||||||||||||||||||||    
T  124534 ggggccaaaatcgcaacattggcaaacttaagaggtcaaaactgtagtttagcctttt 124591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 3598927 - 3598980
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 96  Q
    |||| ||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  3598927 ggggccaaaatcgcaacattggtaaatttaggggaccaaaactgtagtttagcc 3598980  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 5504141 - 5504194
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 96  Q
    |||||||||||||||||||||| ||| ||| | |||||||||||||||||||||    
T  5504141 ggggtcaaaatcgcaacattggcaaacttaagaggtcaaaactgtagtttagcc 5504194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 121402 - 121348
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    ||||||||||| |||||||||| ||| |||| | |||||||||||||||||||||    
T  121402 ggggtcaaaattgcaacattggcaaatttagagtgtcaaaactgtagtttagcct 121348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 24242070 - 24242016
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 97  Q
    ||||||||||||||| | |||  ||||||||||||||||||||| ||||||||||    
T  24242070 ggggtcaaaatcgcacctttgtgaaagttagggggtcaaaactgcagtttagcct 24242016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 17415699 - 17415747
Alignment:
Q  48 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 96  Q
    |||||||||| |||||  ||||||||||||||||||||| |||||||||    
T  17415699 caaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcc 17415747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 14189694 - 14189653
Alignment:
Q  66 aaagttagggggtcaaaactgtagtttagccttttctttatt 107  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||    
T  14189694 aaagttagggggtcaaaactgcagtttagccatttatttatt 14189653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 17414597 - 17414544
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 96  Q
    |||| |||||||||| |||||  |||||||| |||||||||||| |||||||||    
T  17414597 ggggccaaaatcgcaccattgtaaaagttagagggtcaaaactgcagtttagcc 17414544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 8061909 - 8061853
Alignment:
Q  43 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagccttt 99  Q
    |||| |||||||||| ||||   ||||||||||||| ||||||| ||||||||||||    
T  8061909 ggggccaaaatcgcaccattctgaaagttagggggttaaaactgcagtttagccttt 8061853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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