View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1248_low_7 (Length: 414)

Name: NF1248_low_7
Description: NF1248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1248_low_7
NF1248_low_7
[»] chr6 (2 HSPs)
chr6 (29-298)||(13077524-13077793)
chr6 (30-298)||(13073320-13073588)
[»] chr5 (1 HSPs)
chr5 (281-404)||(1759971-1760101)


Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 29 - 298
Target Start/End: Complemental strand, 13077793 - 13077524
Alignment:
Q  29 aaaaagcacattcaggtactagaagaaacaatttctaaagaaaaagaggataaagctcaacaatgtgtgcaagagaagaatgataagaaaggatttcaaa 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13077793 aaaaagcacattcaggtactagaagaaacaatttctaaagaaaaagaggataaagctcaacaatgtgtgcaagagaagaatgataagaaaggatttcaaa 13077694  T
Q  129 caccaaagactattgaagaaaaaatagttctgaagaaaatggaagggttaaagattgcaaagagtgaagaagagaaagagaagtatcaaatggaggaaag 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13077693 caccaaagactattgaagaaaaaatagttctgaagaaaatggaagggttaaagattgcaaagagtgaagaagagaaagagaagtatcaaatggaggaaag 13077594  T
Q  229 gactacaccatttgacaaggcttgtggatccaaaagagtagcaaataaagtgcatgaaaaagtacatgaa 298  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  13077593 gactacaccatttgacaaggcttgtggatccaaaagggtagcagataaagtgcatgaaaaagtacatgaa 13077524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 30 - 298
Target Start/End: Complemental strand, 13073588 - 13073320
Alignment:
Q  30 aaaagcacattcaggtactagaagaaacaatttctaaagaaaaagaggataaagctcaacaatgtgtgcaagagaagaatgataagaaaggatttcaaac 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13073588 aaaagcacattcaggtactagaagaaacaatttctaaagaaaaagaggataaagctcaacaatgtgtgcaagagaagaatgataagaaaggatttcaaac 13073489  T
Q  130 accaaagactattgaagaaaaaatagttctgaagaaaatggaagggttaaagattgcaaagagtgaagaagagaaagagaagtatcaaatggaggaaagg 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13073488 accaaagactattgaagaaaaaatagttctgaagaaaatggaagggttaaagattgcaaagagtgaagaagagaaagagaagtatcaaatggaggaaagg 13073389  T
Q  230 actacaccatttgacaaggcttgtggatccaaaagagtagcaaataaagtgcatgaaaaagtacatgaa 298  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  13073388 actacaccatttgacaaggcttgtggatccaaaagggtagcagataaagtgcatgaaaaagtacatgaa 13073320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 281 - 404
Target Start/End: Complemental strand, 1760101 - 1759971
Alignment:
Q  281 catgaaaaagtacatgaatccaaatttttctctttgttcttgttctaattttcatctttcccttctttgttgttatttggaaaa-------atgaaccaa 373  Q
    ||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||       |||||||||    
T  1760101 catgaaaaagaccttgaatccaaatttttctctttgttcttgttctaattttcatctttctcttctttgttgttatttggaaaaccagatgatgaaccaa 1760002  T
Q  374 ctttcttactctcttcctcttccgctctctg 404  Q
    |||||||||||||||||||||||||||||||    
T  1760001 ctttcttactctcttcctcttccgctctctg 1759971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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