View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1248_low_8 (Length: 380)

Name: NF1248_low_8
Description: NF1248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1248_low_8
NF1248_low_8
[»] chr4 (8 HSPs)
chr4 (28-380)||(9603406-9603758)
chr4 (70-258)||(9594645-9594833)
chr4 (61-343)||(9582840-9583136)
chr4 (61-343)||(9588535-9588831)
chr4 (18-182)||(9573428-9573593)
chr4 (75-182)||(9568282-9568389)
chr4 (72-168)||(54295949-54296045)
chr4 (96-169)||(37894927-37895000)
[»] chr6 (19 HSPs)
chr6 (66-172)||(32745744-32745850)
chr6 (61-187)||(32973513-32973639)
chr6 (66-169)||(29123217-29123320)
chr6 (70-167)||(29144359-29144456)
chr6 (66-166)||(34279400-34279500)
chr6 (72-167)||(29130392-29130487)
chr6 (66-157)||(29149753-29149844)
chr6 (66-188)||(29152965-29153087)
chr6 (70-166)||(34259145-34259241)
chr6 (70-167)||(21379332-21379429)
chr6 (99-184)||(34281021-34281106)
chr6 (72-159)||(29299150-29299237)
chr6 (71-167)||(23216862-23216958)
chr6 (70-127)||(29136409-29136466)
chr6 (70-170)||(21375240-21375340)
chr6 (61-166)||(25320185-25320290)
chr6 (61-166)||(26149878-26149983)
chr6 (80-130)||(2742756-2742806)
chr6 (61-166)||(13339136-13339241)
[»] scaffold0134 (1 HSPs)
scaffold0134 (71-164)||(17144-17237)
[»] chr7 (1 HSPs)
chr7 (61-145)||(42445421-42445505)
[»] chr2 (2 HSPs)
chr2 (97-163)||(7436173-7436239)
chr2 (78-163)||(7524980-7525065)
[»] chr8 (1 HSPs)
chr8 (29-156)||(31135828-31135955)
[»] chr5 (9 HSPs)
chr5 (66-157)||(40548366-40548457)
chr5 (61-166)||(42777087-42777192)
chr5 (74-166)||(42405805-42405897)
chr5 (76-157)||(31788623-31788704)
chr5 (76-157)||(37512003-37512084)
chr5 (76-157)||(40544233-40544314)
chr5 (97-169)||(32642005-32642077)
chr5 (96-162)||(39725456-39725522)
chr5 (63-163)||(42841468-42841568)
[»] scaffold0054 (2 HSPs)
scaffold0054 (61-154)||(34343-34436)
scaffold0054 (61-154)||(40700-40793)
[»] scaffold0129 (1 HSPs)
scaffold0129 (101-156)||(9564-9619)


Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 28 - 380
Target Start/End: Original strand, 9603406 - 9603758
Alignment:
Q  28 agagattgttgcagaatgtgttcataaaactacggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaa 127  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9603406 agagattgttgcagaatgtgttcataaaactacggttctcagataagagagaccatggtttacaaaagcattcaaatcgcttaaaagatttaagaggcaa 9603505  T
Q  128 tttggatagaatggagaaggcaatatcatcaggtatataggtggtgctaaccttttcattctttacagccaccgactccattgcaggttgcaaatcggaa 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9603506 tttggatagaatggagaaggcaatatcatcaggtatataggtggtgctacccttttcgttctttacagccaccgactccattgcaggttgcaaatcggaa 9603605  T
Q  228 tgcaatgagatcttgaaagcgcaaagtgattagtagaaaccctaaacaatttttgagcgagtttgtggatgaatggagaaaccctaacatcttttatata 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603606 tgcaatgagatcttgaaagcgcaaagtgattagtagaaaccctaaacaacttttgagcgagtttgtggatgaatggagaaaccctaacatcttttatata 9603705  T
Q  328 ttgagaaaggggcccttcaaacccttctgttttccattttctttttgccacaa 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603706 ttgagaaaggggcccttcaaacccttctgttttccattttctttttgccacaa 9603758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 70 - 258
Target Start/End: Original strand, 9594645 - 9594833
Alignment:
Q  70 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatataggt 169  Q
    ||||||||||||||| ||| | ||| ||||||||||||||||||||||||| ||| ||||| |||||||||||||||| ||||||||||| |||||||||    
T  9594645 ataagagagaccatgctttgcgaacacattcaaatcgcttaaaagatttaataggtaatttagatagaatggagaaggaaatatcatcagctatataggt 9594744  T
Q  170 ggtgctaaccttttcattctttacagccaccgactccattgcaggttgcaaatcggaatgcaatgagatcttgaaagcgcaaagtgatt 258  Q
    |||||| ||||||   || ||| | ||||| ||||||||    ||||| |||| ||||||||||||||| |||||||||||||||||||    
T  9594745 ggtgctcacctttctcttttttgcggccactgactccatgagcggttgtaaattggaatgcaatgagatattgaaagcgcaaagtgatt 9594833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 61 - 343
Target Start/End: Original strand, 9582840 - 9583136
Alignment:
Q  61 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcagg 160  Q
    |||| ||||||||||||||||||| ||| | || ||||||||| || ||||  ||||||| |||||||||||||| ||| ||||||||||| ||||||||    
T  9582840 ggttttcagataagagagaccatgctttgcgaatgcattcaaaccgtttaatggatttaaaaggcaatttggataaaatagagaaggcaatttcatcagg 9582939  T
Q  161 tatataggtggtgctaaccttttcattcttta-cagccaccgactccattgcaggttgcaaatcggaatgcaatgagatcttgaaagcgcaaagtgatt- 258  Q
    ||||||||||||||| ||| |||| || |||| |||| || |||||||| |  |||||||||| |||||||| ||||||| ||||||| ||||||||||     
T  9582940 tatataggtggtgctcacc-tttctttttttagcagcgactgactccatcggcggttgcaaattggaatgcagtgagatcctgaaagcacaaagtgattg 9583038  T
Q  259 ------------agtagaaaccctaaacaatttttgagcgagtttgtggatgaatggagaaaccctaac-atcttttatatattgagaaaggggccct 343  Q
                || ||||||||||||||| ||| |||||||| |||||||||||  |||||||||| |  | ||||||||||||||||||| |||||    
T  9583039 ggattactagaaagcagaaaccctaaacaaatttggagcgagtctgtggatgaatatagaaaccctagcgcttttttatatattgagaaaggagccct 9583136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 61 - 343
Target Start/End: Original strand, 9588535 - 9588831
Alignment:
Q  61 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcagg 160  Q
    |||| ||||||||||||||||||| ||| | || ||||||||| || ||||  ||||||| |||||||||||||| ||| ||||||||||| ||||||||    
T  9588535 ggttttcagataagagagaccatgctttgcgaatgcattcaaaccgtttaatggatttaaaaggcaatttggataaaatagagaaggcaatttcatcagg 9588634  T
Q  161 tatataggtggtgctaaccttttcattcttta-cagccaccgactccattgcaggttgcaaatcggaatgcaatgagatcttgaaagcgcaaagtgatt- 258  Q
    ||||||||||||||| ||| |||| || |||| |||| || |||||||| |  |||||||||| |||||||| ||||||| ||||||| ||||||||||     
T  9588635 tatataggtggtgctcacc-tttctttttttagcagcgactgactccatcggcggttgcaaattggaatgcagtgagatcctgaaagcacaaagtgattg 9588733  T
Q  259 ------------agtagaaaccctaaacaatttttgagcgagtttgtggatgaatggagaaaccctaac-atcttttatatattgagaaaggggccct 343  Q
                || ||||||||||||||| ||| |||||||| |||||||||||  |||||||||| |  | ||||||||||||||||||| |||||    
T  9588734 ggattactagaaagcagaaaccctaaacaaatttggagcgagtctgtggatgaatatagaaaccctagcgcttttttatatattgagaaaggagccct 9588831  T

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Target: chr4; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 9573593 - 9573428
Alignment:
Q  18 ggacatcatcagagattgttgcagaatgtgttcataaaactacggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatt 117  Q
    ||||||| | ||||||||||||| ||  ||||| ||||   | |||| |||  ||| |||||||||| ||| | ||| ||||||||||||||||||||||    
T  9573593 ggacatcgtaagagattgttgcaaaacatgttcttaaagtgatggttttcaattaacagagaccatgatttgcgaacacattcaaatcgcttaaaagatt 9573494  T
Q  118 taagaggcaatttggatagaatggagaaggc-aatatcatcaggtatataggtggtgctaaccttt 182  Q
    ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  9573493 taataggcaatttggatagaatggagaaggcaaatatcatcaggtatataggtggtgctcaccttt 9573428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 9568389 - 9568282
Alignment:
Q  75 agagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatataggtggtgc 174  Q
    |||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||| |||| |||| ||||    
T  9568389 agagaccatgatttacgaacgcattcaaatcgcttaatagatttaaaaggcaatttggatagaatagagaaggcaatatcatcagatatacaggttgtgc 9568290  T
Q  175 taaccttt 182  Q
    | ||||||    
T  9568289 tcaccttt 9568282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 54295949 - 54296045
Alignment:
Q  72 aagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatatagg 168  Q
    ||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||    
T  54295949 aagagagaccatgatctacgaacgcattcaaatcgtttaaaagatttaagaggcagttttgataaaatggagaaggaaatatcatcaggtatatagg 54296045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 37895000 - 37894927
Alignment:
Q  96 cattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatataggt 169  Q
    |||||||||||||| |||||||| ||||| | ||||||||||||||||||||||| ||| |||||||| |||||    
T  37895000 cattcaaatcgcttcaaagatttgagagggagtttggatagaatggagaaggcaacatcttcaggtatttaggt 37894927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 32745744 - 32745850
Alignment:
Q  66 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatat 165  Q
    ||||||||||||||||||| ||| | ||||||||||||||| ||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||    
T  32745744 tcagataagagagaccatgatttgcgaacgcattcaaatcgtttaaaagatttaagaggtagttttgataggatggagaaggcaatatcatcaggtatat 32745843  T
Q  166 aggtggt 172  Q
    || ||||    
T  32745844 agttggt 32745850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 61 - 187
Target Start/End: Original strand, 32973513 - 32973639
Alignment:
Q  61 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcagg 160  Q
    |||| ||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||  |||||| ||| |||||||     
T  32973513 ggttttcagataagagagaccatgatttacaaacacattcaaaacgcttgaaagatttaagaggcaattttgatagaatatagaaggaaatttcatcaga 32973612  T
Q  161 tatataggtggtgctaaccttttcatt 187  Q
     ||||| |||||||| |||||||||||    
T  32973613 aatatatgtggtgctcaccttttcatt 32973639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 66 - 169
Target Start/End: Complemental strand, 29123320 - 29123217
Alignment:
Q  66 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatat 165  Q
    ||||| ||||||||||||| ||| | |||| |||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  29123320 tcagacaagagagaccatgatttgcgaacggattcaactcgtttaaaagatttaagaggcaattttgatagaatggagaaggcaatatcatcagatatat 29123221  T
Q  166 aggt 169  Q
    ||||    
T  29123220 aggt 29123217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 29144456 - 29144359
Alignment:
Q  70 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatatag 167  Q
    |||||||| |||| | ||||| ||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||  ||||||||    
T  29144456 ataagagataccaagatttacgaacgcatccaaatcgcttcaaagatttaagaggcaatttcgatagaatggataaggcaatatcatcgagtatatag 29144359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 66 - 166
Target Start/End: Original strand, 34279400 - 34279500
Alignment:
Q  66 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatat 165  Q
    |||||||| ||| |||||| ||||||||| |||||||| | ||| |||||||||||||| ||||| || ||||||||||||||||||||||||| |||||    
T  34279400 tcagataaaagataccatgatttacaaacacattcaaaactcttgaaagatttaagaggtaattttgaaagaatggagaaggcaatatcatcagatatat 34279499  T
Q  166 a 166  Q
    |    
T  34279500 a 34279500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 72 - 167
Target Start/End: Complemental strand, 29130487 - 29130392
Alignment:
Q  72 aagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatatag 167  Q
    ||||||||||||| ||||| |||| ||||||||||||| ||||||||||||||||| || || ||||||||||||  |||||||| ||||||||||    
T  29130487 aagagagaccatgatttacgaacggattcaaatcgcttgaaagatttaagaggcaactttgagagaatggagaagtgaatatcatgaggtatatag 29130392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 66 - 157
Target Start/End: Original strand, 29149753 - 29149844
Alignment:
Q  66 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatc 157  Q
    ||||| ||||||||||||| ||| | ||||||||||||||  ||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  29149753 tcagacaagagagaccatgatttgcgaacgcattcaaatcagttaaaagatttaagaggcaattttgagagaatggagaaggctatatcatc 29149844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 29152965 - 29153087
Alignment:
Q  66 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatat 165  Q
    ||||||| ||| ||||||| ||| | ||| ||||||||  |||| |||||||||||||||||||| || ||||||||||||||||||||||||| ||| |    
T  29152965 tcagataggagggaccatgatttgcgaacacattcaaaatgcttgaaagatttaagaggcaattttgagagaatggagaaggcaatatcatcagatatgt 29153064  T
Q  166 aggtggtgctaaccttttcattc 188  Q
    | |  ||||| ||||||||||||    
T  29153065 atgctgtgctcaccttttcattc 29153087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 34259145 - 34259241
Alignment:
Q  70 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatata 166  Q
    ||||||||||||||| ||||| ||||||| |||||||||| ||||| |||||||| | ||||  |||||| |||||||||||||||| |||||||||    
T  34259145 ataagagagaccatgatttacgaacgcatccaaatcgctttaaagacttaagaggtagtttgtgtagaatagagaaggcaatatcatgaggtatata 34259241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 21379332 - 21379429
Alignment:
Q  70 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatatag 167  Q
    ||||||||||||||| |||||  |||||| |||||||||| |||||||||||||| || || |||||||| |||||| | ||||||||| ||| ||||    
T  21379332 ataagagagaccatgatttacggacgcatccaaatcgcttcaaagatttaagaggtaacttcgatagaatagagaagactatatcatcatgtaaatag 21379429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 34281106 - 34281021
Alignment:
Q  99 tcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatataggtggtgctaaccttttc 184  Q
    ||||| ||||| |||||||||||||||||||| || ||||| ||||||||||||||||||| ||| || | |||||| ||||||||    
T  34281106 tcaaaacgcttgaaagatttaagaggcaattttgagagaatagagaaggcaatatcatcagatatgtatgcggtgctcaccttttc 34281021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 29299237 - 29299150
Alignment:
Q  72 aagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcag 159  Q
    ||||||||||||| ||| | ||| |||||||| ||||||||||||||||||||||| || || |||||||| || || ||||||||||    
T  29299237 aagagagaccatgatttgcgaacacattcaaaacgcttaaaagatttaagaggcaactttgagagaatggaaaaagctatatcatcag 29299150  T

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Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 23216862 - 23216958
Alignment:
Q  71 taagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatatag 167  Q
    |||||||||||||| ||| | ||| |||||||||| ||| |||||||||||||| || || ||||||||||| |||   ||||| ||||||||||||    
T  23216862 taagagagaccatgatttgcgaacacattcaaatctcttcaaagatttaagaggtaacttcgatagaatggataagcttatatcgtcaggtatatag 23216958  T

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Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 29136466 - 29136409
Alignment:
Q  70 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaa 127  Q
    ||||||||||||||| ||| |||||||||||||  ||||| |||||||||||||||||    
T  29136466 ataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaa 29136409  T

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Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 170
Target Start/End: Original strand, 21375240 - 21375340
Alignment:
Q  70 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatataggt 169  Q
    ||||||| ||||||| |||| | |||||| |||||| ||| |||||||||||||  ||||| |||||||| ||||||   ||||||||| ||| ||||||    
T  21375240 ataagagggaccatgatttatagacgcatccaaatcacttcaaagatttaagagataatttcgatagaatagagaagagtatatcatcatgtaaataggt 21375339  T
Q  170 g 170  Q
    |    
T  21375340 g 21375340  T

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Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 166
Target Start/End: Original strand, 25320185 - 25320290
Alignment:
Q  61 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcagg 160  Q
    |||| ||| ||||||| ||||||| ||| | ||  |||| ||||||||||||||||||||| ||||| || |||||||| || | ||| |||||||| |     
T  25320185 ggttctcaaataagagggaccatgattttcgaatacattgaaatcgcttaaaagatttaagcggcaactttgatagaattgaaacggctatatcatctga 25320284  T
Q  161 tatata 166  Q
    ||||||    
T  25320285 tatata 25320290  T

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Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 166
Target Start/End: Original strand, 26149878 - 26149983
Alignment:
Q  61 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcagg 160  Q
    |||| ||| ||||||| ||||||| ||| | ||  |||| ||||||||||||||||||||| ||||| || |||||||| || | ||| |||||||| |     
T  26149878 ggttctcaaataagagggaccatgattttcgaatacattgaaatcgcttaaaagatttaagcggcaactttgatagaattgaaacggctatatcatctga 26149977  T
Q  161 tatata 166  Q
    ||||||    
T  26149978 tatata 26149983  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 2742756 - 2742806
Alignment:
Q  80 ccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaattt 130  Q
    ||||| |||||| |||||| |||||||||| |||||||| |||||||||||    
T  2742756 ccatgatttacatacgcatccaaatcgctttaaagattttagaggcaattt 2742806  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 13339241 - 13339136
Alignment:
Q  61 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcagg 160  Q
    |||| ||| ||||||| ||||||| ||| | |||||||  |||||| |  |||||||||||||| | |||||||||||| | ||||| ||| ||||| |     
T  13339241 ggttttcaaataagagtgaccatgatttgcgaacgcatcgaaatcggtacaaagatttaagaggaagtttggatagaatcgtgaaggaaatgtcatctga 13339142  T
Q  161 tatata 166  Q
    ||||||    
T  13339141 tatata 13339136  T

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Target: scaffold0134 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 17144 - 17237
Alignment:
Q  71 taagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtata 164  Q
    |||||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||| || ||||||||||| |||  |||||| |||||||||    
T  17144 taagagagaccatgatttgcaaacgcattcaaatctcttcaaagatttaagaggcaactttgatagaatggataagctaatatcgtcaggtata 17237  T

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Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 42445505 - 42445421
Alignment:
Q  61 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaa 145  Q
    |||| |||||||||||||||||   ||||| ||| ||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  42445505 ggttttcagataagagagaccacaatttacgaacacattcaaatcgcttaaaagatttaagaggtaattttgatataatggagaa 42445421  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 7436173 - 7436239
Alignment:
Q  97 attcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtat 163  Q
    ||||||||||||| ||||||||||||||||| || |||||||||||||  |||| ||||||||||||    
T  7436173 attcaaatcgcttcaaagatttaagaggcaaatttgatagaatggagattgcaacatcatcaggtat 7436239  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 7524980 - 7525065
Alignment:
Q  78 gaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtat 163  Q
    |||||||||||| | ||  ||||||||||||  |||||||||||||||||||| ||||||||||| || |||| ||| ||||||||    
T  7524980 gaccatggtttagatacagattcaaatcgctgcaaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtat 7525065  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 156
Target Start/End: Original strand, 31135828 - 31135955
Alignment:
Q  29 gagattgttgcagaatgtgttcataaaactacggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaat 128  Q
    ||||||||||| |||  ||||||||||| || |||| ||| |||| |||||||||||||| || || ||| |||||||||| ||  |||| | ||||||     
T  31135828 gagattgttgcggaacatgttcataaaaatagggttttcaaataaaagagaccatggtttgcatacacatgcaaatcgcttcaagaattttaaaggcaac 31135927  T
Q  129 ttggatagaatggagaaggcaatatcat 156  Q
    ||||| | ||| ||||||| ||||||||    
T  31135928 ttggagataatagagaaggaaatatcat 31135955  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 40548457 - 40548366
Alignment:
Q  66 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatc 157  Q
    ||||||| | ||||||||| |||||  | ||||||||||||||| |||||||||| ||| | |||  |||||||||| ||||||||||||||    
T  40548457 tcagataggtgagaccatgatttacttatgcattcaaatcgcttcaaagatttaacaggaagtttttatagaatggaaaaggcaatatcatc 40548366  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 42777192 - 42777087
Alignment:
Q  61 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcagg 160  Q
    |||||||| ||||||||||||||| ||| || || ||||||||||| ||    ||||||| ||| ||||| || ||||| ||||| |||||||||||| |    
T  42777192 ggttatcaaataagagagaccatgatttgcacacacattcaaatcgtttggttgatttaataggtaattttgagagaatagagaaagcaatatcatcatg 42777093  T
Q  161 tatata 166  Q
    ||||||    
T  42777092 tatata 42777087  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 42405897 - 42405805
Alignment:
Q  74 gagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatata 166  Q
    |||| |||||| |||||  |||| |||||||||||| |||||||||| ||||| ||| || | ||| || |||||||||||||| ||||||||    
T  42405897 gagataccatgatttacgtacgctttcaaatcgctttaaagatttaacaggcagtttcgacataatagataaggcaatatcatctggtatata 42405805  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 31788704 - 31788623
Alignment:
Q  76 gagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatc 157  Q
    ||||||||| ||| |  |||||||||||||| || ||||||||||  || | ||| |||||||| |||||||||||||||||    
T  31788704 gagaccatgatttgcgtacgcattcaaatcgtttcaaagatttaatggggagttttgatagaatagagaaggcaatatcatc 31788623  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 37512084 - 37512003
Alignment:
Q  76 gagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatc 157  Q
    ||||||||| ||| || ||  |||||||||| || |||||||| ||||||| ||| |||| ||||||||||||||| |||||    
T  37512084 gagaccatgatttgcatacatattcaaatcgtttcaaagatttgagaggcagttttgataaaatggagaaggcaatgtcatc 37512003  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 40544314 - 40544233
Alignment:
Q  76 gagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatc 157  Q
    ||||||||| ||| |  |||||||||||||| || |||||||||| ||| | ||| |||||||| |||||||||| ||||||    
T  40544314 gagaccatgattttcttacgcattcaaatcgtttcaaagatttaatagggagttttgatagaatagagaaggcaacatcatc 40544233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 32642077 - 32642005
Alignment:
Q  97 attcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatataggt 169  Q
    |||||||| |||  |||||||||||||| ||||| |||||||| || |||| |||||||||  ||||||||||    
T  32642077 attcaaattgctacaaagatttaagaggtaattttgatagaattgaaaaggtaatatcatcgtgtatataggt 32642005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 39725456 - 39725522
Alignment:
Q  96 cattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggta 162  Q
    |||||||||||||| |||||||| | ||| | ||| || ||||| |||||| |||||||||||||||    
T  39725456 cattcaaatcgcttcaaagatttgaaaggaagttttgacagaatagagaagacaatatcatcaggta 39725522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 42841468 - 42841568
Alignment:
Q  63 ttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggta 162  Q
    |||||| |||| |||||||||| ||||   |||||||||||| |||| ||||||| || ||| | ||| || |||||  ||||| |||||||||| ||||    
T  42841468 ttatcaaataatagagaccatgatttatgtacgcattcaaatggcttcaaagattcaatagggagttttgagagaatatagaagacaatatcatcgggta 42841567  T
Q  163 t 163  Q
    |    
T  42841568 t 42841568  T

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Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 154
Target Start/End: Original strand, 34343 - 34436
Alignment:
Q  61 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatc 154  Q
    |||| ||| ||||||| ||||||| ||||| |||||||  |||||| || |||||||||||||| | |||||||||||| | ||||| ||||||    
T  34343 ggttttcaaataagagtgaccatgatttacgaacgcatcgaaatcggttcaaagatttaagagggagtttggatagaattgtgaaggaaatatc 34436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 154
Target Start/End: Original strand, 40700 - 40793
Alignment:
Q  61 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatc 154  Q
    |||| ||| ||||||| ||||||| ||||| |||||||  |||||| || ||||||| |||||| | |||||||||||| | ||||| ||||||    
T  40700 ggttttcaaataagagtgaccatgatttacgaacgcatcgaaatcggttcaaagattgaagagggagtttggatagaatcgtgaaggaaatatc 40793  T

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Target: scaffold0129 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 9619 - 9564
Alignment:
Q  101 aaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcat 156  Q
    |||||| || ||||||||||||||||||||||| |||||||| || ||||| ||||    
T  9619 aaatcgtttcaaagatttaagaggcaatttggagagaatggaaaatgcaatgtcat 9564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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