View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249-Insertion-3 (Length: 173)
Name: NF1249-Insertion-3
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249-Insertion-3 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 1e-61; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 21 - 173
Target Start/End: Original strand, 28220359 - 28220514
Alignment:
| Q |
21 |
gttaccattgtccaagcttctctattcaacttcgggaagattgatttttggctccgtgaagttgaccgtgaaatcaccatccaatgaaagaa----tcaa |
116 |
Q |
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| T |
28220359 |
gttaccatcgtccaagcttctctattcaacttcgggaagattgatttt-ggctccgtgaagttgaccgtgaaatcaccatccaatgaaagaaagaatcag |
28220457 |
T |
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| Q |
117 |
agatggttccaatcttcaatataatttctataaggtttcctgccctcaagctgagaa |
173 |
Q |
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| T |
28220458 |
agatggttccaatcttcaatataatttctataaggtttcttgccctcaagctgagaa |
28220514 |
T |
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Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 32309286 - 32309354
Alignment:
| Q |
102 |
caatgaaagaatcaaagatggttccaatcttcaatataatttctataaggtttcctgccctcaagctga |
170 |
Q |
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| T |
32309286 |
caatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttgccctcaagctga |
32309354 |
T |
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Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 32565549 - 32565481
Alignment:
| Q |
102 |
caatgaaagaatcaaagatggttccaatcttcaatataatttctataaggtttcctgccctcaagctga |
170 |
Q |
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| T |
32565549 |
caatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttgccctcaagctga |
32565481 |
T |
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Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 32799780 - 32799712
Alignment:
| Q |
102 |
caatgaaagaatcaaagatggttccaatcttcaatataatttctataaggtttcctgccctcaagctga |
170 |
Q |
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| T |
32799780 |
caatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttgccctcaagctga |
32799712 |
T |
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Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 32806734 - 32806666
Alignment:
| Q |
102 |
caatgaaagaatcaaagatggttccaatcttcaatataatttctataaggtttcctgccctcaagctga |
170 |
Q |
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| T |
32806734 |
caatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttgccctcaagctga |
32806666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 32815171 - 32815103
Alignment:
| Q |
102 |
caatgaaagaatcaaagatggttccaatcttcaatataatttctataaggtttcctgccctcaagctga |
170 |
Q |
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| T |
32815171 |
caatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttgccctcaagctga |
32815103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 28215778 - 28215710
Alignment:
| Q |
105 |
tgaaagaatcaaagatggttccaatcttcaatataatttctataaggtttcctgccctcaagctgagaa |
173 |
Q |
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| T |
28215778 |
tgaaagtatcagagatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaa |
28215710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 6e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 301432 - 301500
Alignment:
| Q |
102 |
caatgaaagaatcaaagatggttccaatcttcaatataatttctataaggtttcctgccctcaagctga |
170 |
Q |
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| T |
301432 |
caatcaaagaatcagagatggttccaatcttcaatataatttctatagggattctagccctcaagctga |
301500 |
T |
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