View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249-Insertion-4 (Length: 895)
Name: NF1249-Insertion-4
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249-Insertion-4 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 656; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 8 - 895
Target Start/End: Original strand, 834755 - 835661
Alignment:
| Q |
8 |
atatatacagattgcaaaggagaggacaacaaggaagacttagaggtatatacaaa-----gcttcttaatttctccttttattcttcaattcaatcaca |
102 |
Q |
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| T |
834755 |
atatatacggattgcaaaggagaggacaacaaggaagacttagaggtatatacaaattaaagcttcttaatttctccttttattcttcaattcaatcaca |
834854 |
T |
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| Q |
103 |
ttccctttgatttatttgtcaactttagcatatactattattttgtttatcattatttcatatttgtaaccatgtttgttgcaccttcttagtgcactta |
202 |
Q |
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| T |
834855 |
ttccctttgatttatttgtcaactttagcatatactatt---ttgtttatcattatttcatatttgtaaccatgtttgttgcaccttcttagtgcacctt |
834951 |
T |
|
| Q |
203 |
tttgtatattgttgttatcatgctaaactaagaactaatgccaaaattagcacactttttcaggatacagactgtggaattagatgtgttttgannnnnn |
302 |
Q |
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| T |
834952 |
tttgtatattgttgttatcatgctaaactaagaactaatgccaaaattagcacactttttcag-atacaaactgtggaattagatatgttttgatttctt |
835050 |
T |
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| Q |
303 |
n--ataatgtgcatatatgccaatactgggattcaatgtaaaccccgtggtaccaagttcgattcatactnnnnnnntagannnnnnnctccttttgtga |
400 |
Q |
| |
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| T |
835051 |
tttataatgtgcatatatgccaatactgggattcaatgtaaaccccgtggtaccaagttcgattcatactaaaaaaatagatttttttctccttttgtga |
835150 |
T |
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| Q |
401 |
cttgccataatttcaaattggttgattctggatatatgggttcttttttcataactttagatatacaatagaacttctcttggaatgttctgcacaatga |
500 |
Q |
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| T |
835151 |
cttgccataatttcaaattggttgattctggatatatgagttcttttttcataactttagatatacaatagaacttctcttggaatgttctgcacaatga |
835250 |
T |
|
| Q |
501 |
ttggtattgatacctagcata----------------acaaatagtactattagtaatatattgctcctctcaatcactaatacatggaatgaatttgta |
584 |
Q |
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| T |
835251 |
ttggtattgatacctagcatacctaaagtcttttctaacaaatagtactgttagtaatatattgctcctctcaatcactaatacatggaatgaatttgta |
835350 |
T |
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| Q |
585 |
attcttacatctactggcctttgttgttcacagatagaacatactcgaaacctagaaagtggatgcgaggtaaaggacgtgaaaccctgcaatttggttg |
684 |
Q |
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| T |
835351 |
attcttacatctactggcctttgttgttcacagatagaacatactcgaaacctagaaagtggatgcgaggtaaaggacgtgaaaccctgcaatttggctg |
835450 |
T |
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| Q |
685 |
ctgctacaattatgcagtggtaagtaattaaggtgc---attttagttttcatctctagttagtagttactatttgatacttattacttttgt-aaatgt |
780 |
Q |
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| T |
835451 |
ctgctacaattatgcagtggtaagtaattaaggtgcattattttagttttcatctc----tagtagttactatttgatacttattacttttgtaaaatgt |
835546 |
T |
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| Q |
781 |
tgcaggacaaatatggcaaccctcctggtatatgtagaactgaagaggttgatcctttgccggacgtgttcaagc-aatgataaagagaatgggttagat |
879 |
Q |
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| T |
835547 |
tgcaggacaaatatggtaaccctcctggtatatgtagaactgaagaggttgatcctttgccggacgtgttcaagcaaatgataaagagaat-ggttagat |
835645 |
T |
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| Q |
880 |
ggaacataattcctcc |
895 |
Q |
| |
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| T |
835646 |
ggaacataattcctcc |
835661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 567 - 895
Target Start/End: Original strand, 813597 - 813928
Alignment:
| Q |
567 |
acatggaatgaatttgtaattcttacatctactggcctttgttgttcacagatagaacatactcgaaacctagaaagtggatgcgaggtaaaggacgtga |
666 |
Q |
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| T |
813597 |
acatggaatgaatttgtaattcttacatctaccg-cctttattgttcacagaaagaacatattcaaaacctagaaagtggatgcgaggtaaaggacgtga |
813695 |
T |
|
| Q |
667 |
aaccctgcaatttggttgctgctacaattatgcagtggtaagtaattaaggtgc---attttagttttcatctctagttagtagttactatttgatactt |
763 |
Q |
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| T |
813696 |
aaccctacaatttggttgctgctacaactatgcagtggtaagtaattaaggttgttgatttcagttttcatctctagttagtagttactaattgatacta |
813795 |
T |
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| Q |
764 |
attacttttgtaaa-tgttgcaggacaaatatggcaaccctcctggtatatgtagaactgaagaggttgatcctttgccggacgtgttcaagc-aatgat |
861 |
Q |
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| T |
813796 |
attatttttgtaaaatgttgcaggacaaaaatggtaacccccctggtataagtagaactgaagaggttgatccattaccacgcatgttcaagcaaatgat |
813895 |
T |
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| Q |
862 |
aaagagaatgggttagatggaacataattcctcc |
895 |
Q |
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| T |
813896 |
aaagaggat-ggttagatggaaaataattcctcc |
813928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 8 - 296
Target Start/End: Original strand, 813066 - 813338
Alignment:
| Q |
8 |
atatatacagattgcaaaggagaggacaacaaggaagacttagaggtatatacaaagcttcttaatttctccttttattcttcaattcaatcacattccc |
107 |
Q |
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| T |
813066 |
atatatacatattgcaacggagaggacaacaaggaagactgagaggtatatgcaaaacttcctatcttctc--tttattcttcaattcaatcacaattcc |
813163 |
T |
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| Q |
108 |
tttgatttatttgtcaactttagcatatactattattttgtttatcattatttcatatttgtaaccatgtttgttgcaccttcttagtgcacttatttgt |
207 |
Q |
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| T |
813164 |
tttggtttatttgttaacttcaacatatac---ttttttgtttttcattagttcatatttgtactcatgtttgttgcaccttctca------------at |
813248 |
T |
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| Q |
208 |
atattgttgttatcatgctaaactaagaactaatgccaaaattagcacac-tttttcaggatacagactgtggaattagatgtgttttga |
296 |
Q |
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| T |
813249 |
atattgttgttatcatgctaaactcagaactaatactaaaattagcatactttttttaggatacaaaatgtggaattagatgtgttttga |
813338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 402 - 507
Target Start/End: Original strand, 813443 - 813547
Alignment:
| Q |
402 |
ttgccataatttcaaattggttgattctggatatatgggttcttt-tttcataactttagatatacaatagaacttctcttggaatgttctgcacaatga |
500 |
Q |
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|||| ||| |||||||||||||||||||||||| || |||||| ||||||||| ||| |||||| |||| | ||||| ||||||||||||||||| | |
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| T |
813443 |
ttgcaatagtttcaaattggttgattctggatacatcacttctttctttcataacgtta--tatacactagatcctctctaggaatgttctgcacaataa |
813540 |
T |
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| Q |
501 |
ttggtat |
507 |
Q |
| |
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| T |
813541 |
ttggtat |
813547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 316 - 370
Target Start/End: Original strand, 813350 - 813403
Alignment:
| Q |
316 |
tatgccaatactgggattcaatgtaaaccccgtggtaccaagttcgattcatact |
370 |
Q |
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|||||||| | ||||||||||||||||| | ||||| |||||||||||||||||| |
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| T |
813350 |
tatgccaagattgggattcaatgtaaactc-gtggtgccaagttcgattcatact |
813403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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