View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1249-Insertion-6 (Length: 65)
Name: NF1249-Insertion-6
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249-Insertion-6 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 55; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 31244672 - 31244614
Alignment:
| Q |
7 |
aactgtgacatcccaatccaaaatcaaagactcatttacaagggaaacctcttgcagaa |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31244672 |
aactgtgacatcccaatccaaaatcaaagactcatttacaagggaaacatcttgcagaa |
31244614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 30416271 - 30416213
Alignment:
| Q |
7 |
aactgtgacatcccaatccaaaatcaaagactcatttacaagggaaacctcttgcagaa |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
30416271 |
aactgtgacatcccaatccaaaatcaaagactcattcacaagggaaaaatcttgcagaa |
30416213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 7206943 - 7206910
Alignment:
| Q |
14 |
acatcccaatccaaaatcaaagactcatttacaa |
47 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
7206943 |
acatcccaatacaaaatcaaagactcatttacaa |
7206910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University