View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12490_high_1 (Length: 240)
Name: NF12490_high_1
Description: NF12490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12490_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33595048 - 33594825
Alignment:
| Q |
1 |
gagttggatttcctctcatacaacttattctatgcagaaaatagcagttaagaagatggatgtacaagcatcaatggattttctttgtgagttgaaggtc |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33595048 |
gagttggatttcctctcatacaatttattctatgcagaaaatagcagttaagaagatggatgtacaagcatcaatagattttctttgtgagttgaaggtc |
33594949 |
T |
|
| Q |
101 |
ttaacacatgttctacttgaatacggtatacccttcaacatcttaagccatacatgttatatttaggtaagataatcaatcatttttataatatgatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33594948 |
ttaacacatgttctacttgaatacggtatacccttcaacatcttaagccatacatgttatatttaggtaagataatcaatcatttttataatatgatttg |
33594849 |
T |
|
| Q |
201 |
aagaatcatcattcaactacaaag |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
33594848 |
aagaatcatcattcaactacaaag |
33594825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 37238548 - 37238771
Alignment:
| Q |
7 |
gatttcctctcatacaacttattctatgcagaaaatagcagttaagaagatggatgtacaagcatcaatggattttctttgtgagttgaaggtcttaaca |
106 |
Q |
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||||||||||||| ||||||||| ||||||||||| |||| ||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| |
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| T |
37238548 |
gatttcctctcatgcaacttattgtatgcagaaaacagcaattaagaagatggatgtacaagcatcgtccgaatttctctgtgagttgaaggtcttaaca |
37238647 |
T |
|
| Q |
107 |
catgttc--tacttgaatacggtatacc-----cttcaacatcttaagccatacatgttatatttaggtaagataatcaatcatttttataatatgattt |
199 |
Q |
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||||||| |||||||| |||||||| || || ||||||||||||| || |||||||||| | ||||||| | |||||||| ||||| ||| |
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| T |
37238648 |
catgttcatcacttgaatctggtataccatccttttaaaaatcttaagccatatataatatatttaggagatataatcatttatttttat-atatggttt |
37238746 |
T |
|
| Q |
200 |
gaagaatcatcattcaactacaaag |
224 |
Q |
| |
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||||||||||| || |||||||||| |
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| T |
37238747 |
gaagaatcatcgtttaactacaaag |
37238771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 37310446 - 37310552
Alignment:
| Q |
7 |
gatttcctctcatacaacttattctatgcagaaaatagcagttaagaagatggatgtacaagcatcaatggattttctttgtgagttgaaggtcttaaca |
106 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||| |||| |||||||||||||||| |||||||| || ||||||||||||||||||||||||||| |
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| T |
37310446 |
gatttcctctcatgcaacttattgtatgcagaaaacagcaattaagaagatggatgtgcaagcatcgtcagaatttctttgtgagttgaaggtcttaaca |
37310545 |
T |
|
| Q |
107 |
catgttc |
113 |
Q |
| |
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||||||| |
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|
| T |
37310546 |
catgttc |
37310552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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