View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12490_high_1_N (Length: 334)
Name: NF12490_high_1_N
Description: NF12490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12490_high_1_N |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 6339331 - 6339645
Alignment:
| Q |
1 |
gttatctaccgtttattcggtttgtttgaatcaattctaagaaattgatcagttatttggacgcttaaatactttggaacttagtttggaggatatgccg |
100 |
Q |
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| T |
6339331 |
gttatctacggtttattcggtttgtttgaatcaattctaagatattggtcagttatttggaagcttaaatactttggaacttagtttggaggatgtgccg |
6339430 |
T |
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| Q |
101 |
ggttgtttatctacgactacgacggtttgacttcatgacaaaggtgtgatgtgtccaacacattgcgttagttgtgtttccacacacgatgatcttgcac |
200 |
Q |
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| T |
6339431 |
ggttgtttatctacgagga------ttcgacatcatgacaaaggtgtgatgtgtctaacacattgcgttagttgtgtttccacacacgatgatctggcac |
6339524 |
T |
|
| Q |
201 |
atttattccctgcttgtccttttgctatccaagtatggcgtttgtcggggctttggtcccaaattcatcatacattgtttactgttgttgttgtttctgc |
300 |
Q |
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| T |
6339525 |
atttattccctgcttgtccttttgctatcctagtatggcgtttgtcggggctttggtcccaaattcatcatacattttttactgttgctgttgtttctgc |
6339624 |
T |
|
| Q |
301 |
tgtagatgctatttttatatt |
321 |
Q |
| |
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| T |
6339625 |
tgtagatactatttttgtatt |
6339645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 2 - 194
Target Start/End: Original strand, 6330624 - 6330811
Alignment:
| Q |
2 |
ttatctaccgtttattcgg-tttgtttgaatcaattctaagaaattgatcagttatttggacgcttaaatactttggaacttagtttggaggatatgccg |
100 |
Q |
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| T |
6330624 |
ttatctacggtttattcgggtttgtttgaaacaattctaagaaattggtcagctatttggaagcttaaatactttggaacttagtttggaggatgtgtcg |
6330723 |
T |
|
| Q |
101 |
ggttgtttatctacgactacgacggtttgacttcatgacaaaggtgtgatgtgtccaacacattgcgttagttgtgtttccacacacgatgatc |
194 |
Q |
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| T |
6330724 |
ggttgttt------gtctaggaggattcgacttcatgacaaaggtgtgatgtgtccaacacattgcgttagttgtgtttctacacacgatgatc |
6330811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 129 - 258
Target Start/End: Complemental strand, 30677964 - 30677835
Alignment:
| Q |
129 |
gacttcatgacaaaggtgtgatgtgtccaacacattgcgttagttgtgtttccacacacgatgatcttgcacatttattccctgcttgtccttttgctat |
228 |
Q |
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| T |
30677964 |
gacttcatgacaaaggtgtgcagtgccctttgcattgcgttagctgtgtttccactcatgaggatctggcgcatttattctttacttgtccgtttgctat |
30677865 |
T |
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| Q |
229 |
ccaagtatggcgtttgtcggggctttggtc |
258 |
Q |
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| T |
30677864 |
ccaagtatggcgcttgtcgggactttggtc |
30677835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 270
Target Start/End: Complemental strand, 13167020 - 13166879
Alignment:
| Q |
129 |
gacttcatgacaaaggtgtgatgtgtccaacacattgcgttagttgtgtttccacacacgatgatcttgcacatttattccctgcttgtccttttgctat |
228 |
Q |
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|||||||| |||||||||| ||| || ||| |||||||||||||||||||||| || || ||||| ||||||||||| ||| | || || |||| |
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| T |
13167020 |
gacttcataacaaaggtgtacagtgccctacaaattgcgttagttgtgtttccactcatgaggatctgacacatttattctttgcgtacccaatttctat |
13166921 |
T |
|
| Q |
229 |
ccaagtatggcgtttgtcggggctttggtcccaaattcatca |
270 |
Q |
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| T |
13166920 |
ccaagtatggcggttgtctgggctttagtctcaaattcatca |
13166879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 129 - 270
Target Start/End: Complemental strand, 13179165 - 13179024
Alignment:
| Q |
129 |
gacttcatgacaaaggtgtgatgtgtccaacacattgcgttagttgtgtttccacacacgatgatcttgcacatttattccctgcttgtccttttgctat |
228 |
Q |
| |
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||||||||||||||||||| ||| || || |||||||||||||||||||||| || || ||||| ||||||||||| ||| | || || |||| |
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| T |
13179165 |
gacttcatgacaaaggtgtatagtgccctacgaattgcgttagttgtgtttccactcatgaggatctgacacatttattctttgcgtacccaatttctat |
13179066 |
T |
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| Q |
229 |
ccaagtatggcgtttgtcggggctttggtcccaaattcatca |
270 |
Q |
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| T |
13179065 |
ccaagtatgacggttgtctgggatttggtctcaaattcatca |
13179024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 28416838 - 28416899
Alignment:
| Q |
197 |
gcacatttattccctgcttgtccttttgctatccaagtatggcgtttgtcggggctttggtc |
258 |
Q |
| |
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||||| |||||| ||| ||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
28416838 |
gcacacttattctttgcgtgtccgtttgctatacaagtatggcgtttgtcggggctttggtc |
28416899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 33212905 - 33212942
Alignment:
| Q |
221 |
tttgctatccaagtatggcgtttgtcggggctttggtc |
258 |
Q |
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| T |
33212905 |
tttgctatacaagtatggcgtttgtcggggctgtggtc |
33212942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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