View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12490_low_1 (Length: 582)
Name: NF12490_low_1
Description: NF12490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12490_low_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 305 - 582
Target Start/End: Original strand, 46239813 - 46240090
Alignment:
| Q |
305 |
gtcacaacacttactttgaagtccaggctagaagtttctttagacgccaaaagcgaatcaagagtgcggcgtataccaccttgttctgatatggtagcaa |
404 |
Q |
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| T |
46239813 |
gtcacaacacttactttgaagtccaggctagaagtttctttagacgccaaaagcgaatcaagagtacggcgtataccaccttgttctgatatggtagcaa |
46239912 |
T |
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| Q |
405 |
tttgaaaacttgtaccggaactgaagaaattaagtctaagatcgagaccgaatagttcctcacaagataattccatgctatttgtgaatgagtcacatca |
504 |
Q |
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| T |
46239913 |
tttgaaaacttgtaccggaactgaagaaattaagtctaagatcgagaccgaatagttcctcacaagataattccatgctatttgtgaatgagtcacatca |
46240012 |
T |
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| Q |
505 |
tatttgtaagcaacaaaaaagccaagaacccagtccatcataaaaattccattcatggtggtatctattactaaaagc |
582 |
Q |
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| T |
46240013 |
tatttgtaagcaacaaaaaagccaagaacccagtccatcataaaaattccattcatggtggtatctattactaaaagc |
46240090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 46239521 - 46239766
Alignment:
| Q |
13 |
ctgtggttttggtgcagattcgagatctgattggtagcctttttgaagttagtgatgctgagatctgcttggtgtattgtcatctcctccggtatgtctg |
112 |
Q |
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| T |
46239521 |
ctgtggttttggtgcagattcgagatctgattggtagcctttttgaagttagtgatgctgagatctgcttggtgtattgtcatctcctccggtatgtctg |
46239620 |
T |
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| Q |
113 |
agttctcatagacttgcatgtttcttgccatgcatattccacatgttccttattttcttccaagtcccatcatccttgttagagataattatacaatctc |
212 |
Q |
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| T |
46239621 |
agttctcatagacttgcatgtttcttgccatgcatattccacatgttccttattttcttccaagtcccatcatcattgttagagataattataaaatctc |
46239720 |
T |
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| Q |
213 |
tattagtttttctaggttgtcctctatcacttgtgaaatactagtc |
258 |
Q |
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| T |
46239721 |
tattagtttttctaggttgtcctctatcacttgtgaaatactagtc |
46239766 |
T |
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