View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12491_high_1 (Length: 447)
Name: NF12491_high_1
Description: NF12491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12491_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 1328332 - 1328773
Alignment:
| Q |
1 |
attaagaaaagcctttggggcagtaaaggatcagacaagcataggactagcaatggtgggaagcagcacctcacttgctgaccttgatgtagctattgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1328332 |
attaagaaaagcctttggggcagtaaaggatcagacaagcataggactagcaatggtgggaagcagcacctcacttgctgaccttgatgtagctattgtg |
1328431 |
T |
|
| Q |
101 |
aaagcgactaggcacgatgaatatccggctgaagagaaatatatacgggagattctgagtttaacatgctactctcgcgcattcattagtgcttgtgtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1328432 |
aaagcgactaggcacgatgaatatccggctgaagagaaatatatacgggagattctgagtttaacatgttactctcgcgcattcattagtgcttgtgtta |
1328531 |
T |
|
| Q |
201 |
ataccctctcgaggcgtctcagcaagactaaaaattggacagtggctttgaaaactcttattttgattcaaaggcttctagcagaaggtgaccctgctta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1328532 |
ataccctctcgaggcgtctcagcaagactaaaaattggacagtggctttgaaaactcttattttgattcaaaggcttctagaagaaggtgaccctgctta |
1328631 |
T |
|
| Q |
301 |
tgagcaagagatattcttctcaactcgacgtgggactcgccttctcaacatgtccgattttcgtgacagctcacaatctggttcgtgggacttctctgca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1328632 |
tgagcaagagatattcttctcaactcgacgtgggactcgccttctcaacatgtccgattttcgtgacagctcacaatctggttcgtgggacttctctgca |
1328731 |
T |
|
| Q |
401 |
tttgtgcgcacatattcgttatatttggatgagaggcttgag |
442 |
Q |
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| T |
1328732 |
tttgtgcgcacatattcgttatatttggatgagaggcttgag |
1328773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 1923655 - 1924015
Alignment:
| Q |
1 |
attaagaaaagcctttggggcagtaaaggatcagacaagcataggactagcaatggtgggaagcagcacctcacttgctgaccttgatgtagctattgtg |
100 |
Q |
| |
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|||||||| |||| |||| ||||| || ||||| ||||||||||| |||||| || |||||||| ||||| | | ||| ||| | ||||| ||||| |
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| T |
1923655 |
attaagaagagccattggagcagtgaaagatcaaacaagcataggcatagcaaaagttggaagcagtgcctcaataggtgatcttcaagtagccattgtt |
1923754 |
T |
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| Q |
101 |
aaagcgactaggcacgatgaatatccggctgaagagaaatatatacgggagattctgagtttaacatgctactctcgcgcattcattagtgcttgtgtta |
200 |
Q |
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||||| || | || |||||| |||| |||||||| | | | || | |||||||| || |||||||| ||||| || |||||||| ||| ||||||| | |
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| T |
1923755 |
aaagcaacaaaacatgatgaaaatccagctgaagaaagacacattagagagattctaagcttaacatgttactcacgagcattcataagttcttgtgtga |
1923854 |
T |
|
| Q |
201 |
ataccctctcgaggcgtctcagcaagactaaaaattggacagtggctttgaaaactcttattttgattcaaaggcttctagcagaaggtgaccctgctta |
300 |
Q |
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| || ||||| | ||| | | |||||| | | ||||||||| ||||| ||||| ||| |||||||||||||| | | || || ||||| | |||||| |
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| T |
1923855 |
acacactctctaaacgtttgatcaagacaagcagttggacagttgctttaaaaacacttgttttgattcaaaggttgttggctgatggtgatcgtgctta |
1923954 |
T |
|
| Q |
301 |
tgagcaagagatattcttctcaactcgacgtgggactcgccttctcaacatgtccgatttt |
361 |
Q |
| |
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||| ||||| |||||||||||||||| |||||| ||||| ||||| |||||||| |||||| |
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|
| T |
1923955 |
tgaacaagaaatattcttctcaactcaacgtggaactcgacttcttaacatgtctgatttt |
1924015 |
T |
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