View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12491_low_2 (Length: 221)
Name: NF12491_low_2
Description: NF12491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12491_low_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43646957 - 43646737
Alignment:
| Q |
1 |
atatatcacatactctggtaaataatgttatggtcttgacaatttttgcttgtagtataattatacatataactagtannnnnnncatgtttgatcccac |
100 |
Q |
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| T |
43646957 |
atatatcacatactctggtaaataatgttatggtcttgacaatttttgcttgtggtataattatacatataactagtatttttttcatgtttgatcccac |
43646858 |
T |
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| Q |
101 |
tcactgttgtttaaaatgggagaagtatctgtagttgatttctttgttgaaataaatttctagattacacggtcatttgtatgcttacagaacaaaaaat |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43646857 |
tcactgctgtttaaaatgggagaagtatctgtagttgatttctttgttgaaataaatttctagattacacggtcatttgtatgcttacagaacaaaaaat |
43646758 |
T |
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| Q |
201 |
tgattcatctccatcagttct |
221 |
Q |
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||||||||||||||||||||| |
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| T |
43646757 |
tgattcatctccatcagttct |
43646737 |
T |
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