View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12492_high_11 (Length: 478)
Name: NF12492_high_11
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Complemental strand, 2795527 - 2795083
Alignment:
| Q |
18 |
gccacgtcttcaaaattagggagtgtagcagacaatcccaccaaccgaatatagtccttcgttgtttcaatctgcctgactgttctagcaatgatacttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795527 |
gccacgtcttcaaaattagggagtgtagcagacaatcccaccaaccgaatatagtccttcgttgtttcaatctgcctgactgttctagcaatgatacttt |
2795428 |
T |
|
| Q |
118 |
caagaacaggccctctgttatcatgaagaagatgaatctcatcaatgataagaagcttcacaagctgagtataaattcgatcacccgactttcgtgtaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795427 |
caagaacaggccctctgttatcatgaagaagatgaatctcatcaatgataagaagcttcacaagctgagtataaattcgatcacccgactttcgtgtaat |
2795328 |
T |
|
| Q |
218 |
aatatcccacttctcaggagttgtgacaataatttgagtctcttccatctgtttctgtgttagtgactggtctccactaagctccctaaccttaacatca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795327 |
aatatcccacttctcaggagttgtgacaataatttgagtctcttccatctgtttctgtgttagtgactggtctccactaagctccctaaccttaacatca |
2795228 |
T |
|
| Q |
318 |
tattcacgcagacgattagataaattgccaacaatctcagttacaagagctttcataggcgcaacataaacaattttataagcactatggtcaattgaac |
417 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795227 |
tattcctgcagacgattagataaattgccaacaatctcagttacaagagctttcataggcgcaacataaacaattttataagcactatggtcaattgaac |
2795128 |
T |
|
| Q |
418 |
catcaccaggatttctatgccgtgcaatctcttgaagtatggtaa |
462 |
Q |
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| T |
2795127 |
catcaccaggatttctatgccgtgcaatctcttgaagtatggtaa |
2795083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 454
Target Start/End: Complemental strand, 29263042 - 29262604
Alignment:
| Q |
16 |
gtgccacgtcttcaaaattagggagtgtagcagacaatcccaccaaccgaatatagtccttcgttgtttcaatctgcctgactgttctagcaatgatact |
115 |
Q |
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||||||| |||||| |||||||||| ||||| |||||||||||||| |||||||| ||||| | ||||||||||||||| ||||||||||||| ||||| |
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| T |
29263042 |
gtgccacatcttcataattagggagagtagccgacaatcccaccaaacgaatataatccttagatgtttcaatctgcctaactgttctagcaacaatact |
29262943 |
T |
|
| Q |
116 |
ttcaagaacaggccctctgttatcatgaagaagatgaatctcatcaatgataagaagcttcacaagctgagtataaattcgatcacccgactttcgtgta |
215 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||||||||||||||| |||||| ||||||| ||||||||||| || |
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| T |
29262942 |
ttcaagaacaggccctctgttatcatgaaggagatgaatttcatcaatgatgacaagcttcacaagctgcgtataagttcgatctcccgactttcgggtg |
29262843 |
T |
|
| Q |
216 |
ataatatcccacttctcaggagttgtgacaataatttgagtctcttccatctgtttctgtgttagtgactggtctccactaagctccctaaccttaacat |
315 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||| | | ||||||||||||||||||||||||||||||||| |||||| |
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| T |
29262842 |
ataatatcccacttctcaggagttgtcacaataatttgagtctcttcgatctgctgcctggttagtgactggtctccactaagctccctaaccgtaacat |
29262743 |
T |
|
| Q |
316 |
catattcacgcagacgattagataaattgccaacaatctcagttacaagagctttcataggcgcaacataaacaattttataagcactatggtcaattga |
415 |
Q |
| |
|
||| || ||| |||||||| ||||| ||||||| ||| | |||||||||||||| || |||||||| ||||||||||| ||||| |||||||| || |
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| T |
29262742 |
tatagtcctgcaaccgattagacaaattcccaacaacctccgccacaagagctttcattggtgcaacatatacaattttatatgcactgtggtcaataga |
29262643 |
T |
|
| Q |
416 |
accatcaccaggatttctatgccgtgcaatctcttgaag |
454 |
Q |
| |
|
||||||| | | ||| |||||||| ||||||| |||||| |
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| T |
29262642 |
accatcatcggtattcctatgccgcgcaatctgttgaag |
29262604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 29189353 - 29189413
Alignment:
| Q |
210 |
cgtgtaataatatcccacttctcaggagttgtgacaataatttgagtctcttccatctgtt |
270 |
Q |
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||||||||||| || || |||||||||||||| || ||||| ||| ||||||| ||||||| |
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| T |
29189353 |
cgtgtaataatgtctcatttctcaggagttgtcaccataatctgactctcttctatctgtt |
29189413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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