View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12492_high_19 (Length: 347)
Name: NF12492_high_19
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 40 - 331
Target Start/End: Complemental strand, 30100852 - 30100558
Alignment:
| Q |
40 |
gtccaaatccttgtgaatacta---actagtacactttcacatacatgttcaatcctatatatatgacataactagctaggacactcaaaatggaagttc |
136 |
Q |
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| T |
30100852 |
gtccaaatccctgtgaatactactgactagtacactttcacatacatgttcaatcctatatatatgacataactagctaggacactcaaaatggaagttc |
30100753 |
T |
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| Q |
137 |
ataccaaactacatgcaattatttcaaggaatatggtcccacaaagtttgcagattttttatggccagaaaaatttagaataactcatacaattccagtt |
236 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30100752 |
atgccaaactacatgcaattatttcaaggaatatggtcccacaaagtttgcagattttttatggccagaaaaatttagaataactcatacgattccagtt |
30100653 |
T |
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| Q |
237 |
ggtgccactacaataggacttctaacaatgtgtgctccaccatcttcaatccaaacaagatccccaaatgaaacattttccttcttgtacataac |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30100652 |
ggtgccactacaataggacttctaacaatgtgtgctccaccatcttcaatccaaacaagatccccaaatgaaacattttccttcttgtacataac |
30100558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 220 - 328
Target Start/End: Original strand, 30086995 - 30087103
Alignment:
| Q |
220 |
ctcatacaattccagttggtgccactacaataggacttctaacaatgtgtgctccaccatcttcaatccaaacaagatccccaaatgaaacattttcctt |
319 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||| || ||| |
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| T |
30086995 |
ctcatataattccagttggtgccactacaataggacttctaacagtgtgtactccaccatcttcaatccaaacaagatcaccaaatgaaacatatttctt |
30087094 |
T |
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| Q |
320 |
cttgtacat |
328 |
Q |
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| T |
30087095 |
cttgtacat |
30087103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 220 - 328
Target Start/End: Original strand, 30090247 - 30090355
Alignment:
| Q |
220 |
ctcatacaattccagttggtgccactacaataggacttctaacaatgtgtgctccaccatcttcaatccaaacaagatccccaaatgaaacattttcctt |
319 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
30090247 |
ctcatataattccccttggtgccactacaataggacttctaacagtgtgtgctccaccatattcaatccaaacaagatccccaaatgaaacattatcctt |
30090346 |
T |
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| Q |
320 |
cttgtacat |
328 |
Q |
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||||||||| |
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| T |
30090347 |
cttgtacat |
30090355 |
T |
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