View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12492_high_27 (Length: 288)
Name: NF12492_high_27
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_high_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 1777814 - 1777555
Alignment:
| Q |
20 |
tctatctaatagctcattcctaattatagagatataatatattattaatatgtttaaccgggaaagacacgttgtgctgattcttctcttctttattctt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1777814 |
tctatctaatagctcattcctaattatagagatataatatattattaatatgtttaaccgggaaagacacgttgtgctgattcttctcttctttattctt |
1777715 |
T |
|
| Q |
120 |
tcatttttcattggtgctaatgggaagcactttgtgcttgttcatggagctggccatggtgcatggtgttggtataaggttgcaaccatgttgaaatcag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1777714 |
tcatttttcattggtgctaatgggaagcactttgtgcttgttcatggagctggccatggtgcatggtgttggtataaggttgcaaccatgttgaaatcag |
1777615 |
T |
|
| Q |
220 |
ctggtcataatgttaccacaattgaattggctgcttgtggtatcagtccaacacaggttc |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1777614 |
ctggtcataatgttaccacaattgaattggctgcttgtggtatcagtccaatacaggttc |
1777555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 1801858 - 1801599
Alignment:
| Q |
20 |
tctatctaatagctcattcctaattatagagatataatatattattaatatgtttaaccgggaaagacacgttgtgctgattcttctcttctttattctt |
119 |
Q |
| |
|
||||| || ||||||||||||||| |||||||||||||||||||| || |||||||| | | ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1801858 |
tctatgtattagctcattcctaatcatagagatataatatattatcaacatgtttaaacaaggaagacacgttgtgttgattcttctcttctttattctt |
1801759 |
T |
|
| Q |
120 |
tcatttttcattggtgctaatgggaagcactttgtgcttgttcatggagctggccatggtgcatggtgttggtataaggttgcaaccatgttgaaatcag |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | |||| || |
|
|
| T |
1801758 |
tcatttttcattggtgctaatgggaagcactttgtgcttgttcatggagctttccatggtgcatggtgttggtataaggttgcaactatgcttaaattag |
1801659 |
T |
|
| Q |
220 |
ctggtcataatgttaccacaattgaattggctgcttgtggtatcagtccaacacaggttc |
279 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
1801658 |
ctggtcataatgttacaactattgacttggctgcttgtggtatcagtccaatccaggttc |
1801599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 1785051 - 1784789
Alignment:
| Q |
20 |
tctatctaatagctcattcctaattatagagatataatatattattaatatgtttaaccgggaaagacacgt---tgtgctgattcttctcttctttatt |
116 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||| |||| ||||||||| |||| |||||||||||||||| ||| |
|
|
| T |
1785051 |
tctatctactagctcattcctaatcatagagatataatatattatcaatatgtttaaacggggaagacacgtaattgtgttgattcttctcttcttcatt |
1784952 |
T |
|
| Q |
117 |
ctttcatttttcattggtgctaatgggaagcactttgtgcttgttcatggagctggccatggtgcatggtgttggtataaggttgcaaccatgttgaaat |
216 |
Q |
| |
|
|||||||||| ||| || |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| | |||| |
|
|
| T |
1784951 |
ctttcattttctgttgatgttaatggaaagcactttgtgcttgttcatggagctggccatggtgaatggtgttggtataaggttgcaactatgcttaaat |
1784852 |
T |
|
| Q |
217 |
cagctggtcataatgttaccacaattgaattggctgcttgtggtatcagtccaacacaggttc |
279 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||| ||||||| ||||| ||| |||| |
|
|
| T |
1784851 |
cagctggtcataatgttacaactattgacatggctgcttcaggtatcaatccaatacaagttc |
1784789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 1772696 - 1772598
Alignment:
| Q |
172 |
gccatggtgcatggtgttggtataaggttgcaaccatgttgaaatcagctggtcataatgttaccacaattgaattggctgcttgtggtatcagtccaa |
270 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| ||| | ||||||||||||||||||||||| || |||||||||||||||| ||||||| ||||| |
|
|
| T |
1772696 |
gccatggtgcatggtgttggtataaggtggtaactatgcttaaatcagctggtcataatgttacaactattgaattggctgcttcaggtatcaatccaa |
1772598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 270
Target Start/End: Complemental strand, 1769053 - 1768927
Alignment:
| Q |
144 |
aagcactttgtgcttgttcatggagctggccatggtgcatggtgttggtataaggttgcaaccatgttgaaatcagctggtcataatgttaccacaattg |
243 |
Q |
| |
|
|||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| || || || | | |
|
|
| T |
1769053 |
aagcactttgtgttgattcatggaggcatccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactag |
1768954 |
T |
|
| Q |
244 |
aattggctgcttgtggtatcagtccaa |
270 |
Q |
| |
|
| ||||||||||||||| || ||||| |
|
|
| T |
1768953 |
acatggctgcttgtggtaccaatccaa |
1768927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 102 - 279
Target Start/End: Original strand, 25727482 - 25727659
Alignment:
| Q |
102 |
cttctcttctttattctttcatttttcattggtgctaatgggaagcactttgtgcttgttcatggagctggccatggtgcatggtgttggtataaggttg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
25727482 |
cttctcttctttattctttcatttttcattggtgttaatgggaagcactttgtgcttgttcatggacctttccatggtgcatggtcttggtataaggttg |
25727581 |
T |
|
| Q |
202 |
caaccatgttgaaatcagctggtcataatgttaccacaattgaattggctgcttgtggtatcagtccaacacaggttc |
279 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
25727582 |
caactatgctgaaatcagctggtcataatgttacaactattgaattggctggttgtggtatcagtccaatacaggttc |
25727659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 25727424 - 25727477
Alignment:
| Q |
20 |
tctatctaatagctcattcctaattatagagatataatatattattaatatgtt |
73 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
25727424 |
tctatctactagctcattcctaattatagagatataatacattatcaagatgtt |
25727477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University