View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12492_high_34 (Length: 223)
Name: NF12492_high_34
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 31702245 - 31702048
Alignment:
| Q |
17 |
acttttggtacgatctgcataatttataacaaatctgtcattaaatactaaacattcaaagtttgctacaaacttccactatatcataaaacactagtaa |
116 |
Q |
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| T |
31702245 |
acttttggtacgatctgcataatttataacaaatctgtcattaaatactaaacattcatagtttgctacaaacttccactatatcataaaacactagtaa |
31702146 |
T |
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| Q |
117 |
gttttaaaataannnnnnngagattgcatatgaaaaatgaagtagtccaggctaccattagccatgtactcataaactagcattttttcttctctctc |
214 |
Q |
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| T |
31702145 |
gttttaaaataatttttttgagattgcataccaaaaatgaagtagtccaggctaccattagccatgtattcataaactaacattttttcttctctctc |
31702048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 31724800 - 31724594
Alignment:
| Q |
17 |
acttttggtacgatctgcataatttataacaaatctgtcattaaatactaaacattcaaagtttgctacaaacttccact-------atatcataaaaca |
109 |
Q |
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| T |
31724800 |
acttttggtacgatctgcataattcataacaaatctattattaaacgttgaatattcaaagttagctacaagctttcacttatcaccatatcataaaaca |
31724701 |
T |
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| Q |
110 |
ctagtaagttttaaaataannnnnnn-gaga-ttgcatatgaaaaatgaagtagtccaggctaccattagccatgtactcataaactagcattttttctt |
207 |
Q |
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| T |
31724700 |
ctggtgaattttaatacaagacttagtgagacttacataccaaaaatgaagtagtctaggctaccattagccatgtattcataaactaacattttttctt |
31724601 |
T |
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| Q |
208 |
ctctctc |
214 |
Q |
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||||||| |
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| T |
31724600 |
ctctctc |
31724594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 31717575 - 31717370
Alignment:
| Q |
17 |
acttttggtacgatctgcataatttataacaaatctgtcattaaatactaaacattcaaagtttgctacaa------acttc-cactatatcataaaaca |
109 |
Q |
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|||||||||||||||||||||||| ||||||||||| | |||||| | || |||||||||| ||||||| |||| ||| ||||||||||||| |
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| T |
31717575 |
acttttggtacgatctgcataattcataacaaatctattattaaacgttgaatattcaaagttagctacaagtttttacttatcaccatatcataaaaca |
31717476 |
T |
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| Q |
110 |
ctagtaagttttaaaataannnnnnn-gaga-ttgcatatgaaaaatgaagtagtccaggctaccattagccatgtactcataaactagcattttttctt |
207 |
Q |
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|| || |||||||| | || |||| || |||| ||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
31717475 |
ctggtgagttttaatacaagacttagtgagacttacataccaaaaatgaagtagtctaggctaccattagccatgtattcataaactaacattttttctt |
31717376 |
T |
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| Q |
208 |
ctctct |
213 |
Q |
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|||||| |
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| T |
31717375 |
ctctct |
31717370 |
T |
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