View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12492_high_4 (Length: 645)
Name: NF12492_high_4
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 18 - 630
Target Start/End: Original strand, 32828879 - 32829491
Alignment:
| Q |
18 |
aattcccaccaccagaacccccactttctctccctacacctttatcaccctccacactcttcggcactacatcctttcctaacttcaaccgtttcttctt |
117 |
Q |
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| T |
32828879 |
aattcccaccaccagaacccccactttctctccctacacctttatcaccctccacactcttcggaactacatcctttcctaacttcaaccgtttcttctt |
32828978 |
T |
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| Q |
118 |
cggtgtgggagagacatcaagcaaaaccggggcacgcctagcccgcgagcttctcctcacccctgaatcagggttcaaatcatgacccacattacactca |
217 |
Q |
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| T |
32828979 |
cggtgtgggagagacatcaagcaaaaccggggcacgcctagcccgcgagcttctcctcacccctgaatcagggttcaaatcatgacccacattacactca |
32829078 |
T |
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| Q |
218 |
ccgtgatttctagtatactcttcctcacaaaatgcatccaatttcttatgtttcttccgaacccgcgacgaggaaggtgatgatcgcatcataacaaacc |
317 |
Q |
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| T |
32829079 |
ccgtgatttctagtatactcttcctcacaaattgcatccaatttcttatgtttcttccgaatccgtgacgaggaaggtgatgatcgcatcataacaaacc |
32829178 |
T |
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| Q |
318 |
aaaatgtataaaaacttcaccaaacagcaatataaatcaaagtgaaaaatgataagaattaaaactttttcgctatgtagaaaactatcaaatgggtatt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32829179 |
aaaatgtataaaaacttcaccaaacagcaatataaatcaaagtgaaaaatgataaaaattaaaactttttcgctatgtagaaaactatcaaatgggtatt |
32829278 |
T |
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| Q |
418 |
cggtgattgtgttactcgttcaattgggtattcaaattcactgtaattgagaggaaaaatggcgtggtggtttcaattgatggtaaaagatggaaaaaac |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32829279 |
cggtgattgtgttactcgttcaattgggtattcaaattcactgtaattgagaggaaaaatggcgtggtggtttcaattgatggtaaaaggtggaaaaaac |
32829378 |
T |
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| Q |
518 |
gaaaccctagaaattgattgggacaagaatcattgtcggagttaaggtttgattgaaggggagttatgtgtgtttattttttgtgtgtgaagattggatt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
32829379 |
gaaaccctagaaattgattgggacaagaatcattgtcggagttaaggtttgattgaagggaagttatgtgtgtttattttttgtgtgtgaagattgcgtt |
32829478 |
T |
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| Q |
618 |
tctgggttctgtg |
630 |
Q |
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| T |
32829479 |
tctgggttctgtg |
32829491 |
T |
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