View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12492_high_5 (Length: 591)
Name: NF12492_high_5
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 3 - 444
Target Start/End: Complemental strand, 25304092 - 25303651
Alignment:
| Q |
3 |
atcgtttgaatacaaatcatttagaagaatatacggagaagtgtgctcggcttgttattcaggaggaggccttttggaaacaaagagctaagatgcactg |
102 |
Q |
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| T |
25304092 |
atcgtgtgaatacaaatcatttagaagaaaatatggagaagtgtgctcggcttgttattcaggaggaggccttttggaaacaaagagctaagatgcactg |
25303993 |
T |
|
| Q |
103 |
gttgaaacaaagggacgtgaatacaaggttcttttacatgtccactgtttcgagaggtaaagtcaagaaagttataaaactggtgtctgataatggttat |
202 |
Q |
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| T |
25303992 |
gttgaaacaaagggacgtgaatagaaggttcttttacatgtccactgtttctagaggtaaagtcaagaaagttacaaaactggtgtttgataatggttat |
25303893 |
T |
|
| Q |
203 |
ttggttatgagataggagcacctatgtgatgtagcaaagaattattttgatgtggtttttgcggccaacaatggtaaccatacgcatgttcttgattttc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25303892 |
ttggttatgagataggagcacctatgtgatgtagcaaataattattttgatgtggtttttgcagccaacaatggtaaccatacgcatgttcttgattttc |
25303793 |
T |
|
| Q |
303 |
taaagtgtgtgggttacccacgaatacaatgatatgcttatgacactgattactagaaaagagcgcaaacatgccctatttcaaatgcaacctgataagt |
402 |
Q |
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| T |
25303792 |
taaagtgtgtgggttacccacgaatacaatgatatgcttatgacactgattactagaaaagagctcaaacatgccctatttcaaatgcaacctgataagt |
25303693 |
T |
|
| Q |
403 |
ccccaaggtctgatggatttaatcttgtgttctatcattatt |
444 |
Q |
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| T |
25303692 |
cctcgaggtctgatggatttaatcctgcgttctatcattatt |
25303651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 443 - 565
Target Start/End: Complemental strand, 25302624 - 25302502
Alignment:
| Q |
443 |
ttcctatattattagtatatatgtcctccataattccatggttcatgatataaaacggatgattaatacatattggtcgggtggaggtggaaataattga |
542 |
Q |
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|||||||||||| |||||||||| ||||||||||||||| | |||||||||||||| ||||||||| ||||| |||| |||||||||| ||||||||||| |
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| T |
25302624 |
ttcctatattatgagtatatatgacctccataattccattggtcatgatataaaacagatgattaacacatactggtggggtggaggttgaaataattga |
25302525 |
T |
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| Q |
543 |
gggattaaatggatgacgtggga |
565 |
Q |
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| T |
25302524 |
gggattaaatggatgacgtggga |
25302502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 7124477 - 7124523
Alignment:
| Q |
62 |
caggaggaggccttttggaaacaaagagctaagatgcactggttgaa |
108 |
Q |
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| T |
7124477 |
caggaggaggcgttttggaagcaaagagcaaaaatgcactggttgaa |
7124523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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