View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12492_high_8 (Length: 536)

Name: NF12492_high_8
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12492_high_8
NF12492_high_8
[»] chr2 (8 HSPs)
chr2 (41-526)||(40058546-40059038)
chr2 (144-526)||(40084605-40084976)
chr2 (307-526)||(40076832-40077052)
chr2 (82-130)||(15861133-15861181)
chr2 (84-130)||(39606952-39606998)
chr2 (208-261)||(40076726-40076780)
chr2 (79-124)||(45281492-45281537)
chr2 (79-124)||(45287953-45287998)
[»] chr8 (3 HSPs)
chr8 (72-130)||(39910475-39910533)
chr8 (72-117)||(43295959-43296004)
chr8 (70-110)||(30114811-30114851)
[»] chr4 (3 HSPs)
chr4 (440-527)||(22016596-22016683)
chr4 (72-130)||(46462391-46462449)
chr4 (82-130)||(46462461-46462509)
[»] chr1 (5 HSPs)
chr1 (72-130)||(34500162-34500220)
chr1 (73-128)||(37096170-37096225)
chr1 (71-121)||(47507584-47507634)
chr1 (71-115)||(19771171-19771215)
chr1 (86-130)||(28456861-28456905)
[»] chr5 (7 HSPs)
chr5 (72-127)||(39933348-39933403)
chr5 (70-130)||(22626810-22626870)
chr5 (71-110)||(27094316-27094355)
chr5 (81-130)||(8955351-8955400)
chr5 (71-148)||(21488280-21488357)
chr5 (82-130)||(13689087-13689135)
chr5 (73-129)||(27385480-27385536)
[»] chr7 (4 HSPs)
chr7 (71-148)||(27115305-27115382)
chr7 (71-116)||(24163343-24163388)
chr7 (70-127)||(31741949-31742006)
chr7 (72-128)||(23852561-23852617)
[»] scaffold0014 (1 HSPs)
scaffold0014 (71-121)||(133207-133257)
[»] chr3 (2 HSPs)
chr3 (71-125)||(43493866-43493920)
chr3 (74-127)||(19227169-19227222)
[»] scaffold0018 (1 HSPs)
scaffold0018 (70-127)||(153979-154036)
[»] chr6 (1 HSPs)
chr6 (72-112)||(21162433-21162473)


Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 41 - 526
Target Start/End: Original strand, 40058546 - 40059038
Alignment:
Q  41 acatttcttgtagtgattatttgctaagctatatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatttggacctgac 140  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40058546 acattttttgtagtgattatttgctaagctatatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatttggacttgac 40058645  T
Q  141 ggagtattaccttgttcctcctcgtagaatgtacattatatatagctagttagctacacatgttatattacccttgttcttcttctaagcatcatcactt 240  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  40058646 ggagtattaccttgtttctcctcatagaatgtacattatatatagctagttagctacacatgttatattactcttgttcttcttcaaagcatcatcactt 40058745  T
Q  241 acatttcacatccacgtgacc-----nnnnnnncacat--gtaacaaataaaccaaaccaaaccaaagtccaatctttccttccctagtgagtttctttt 333  Q
    |||||||||| ||||||||||            |||||  ||||||||||||||||||||||    | | || || ||| |||||||||||||||||||     
T  40058746 acatttcacacccacgtgaccaaaaaatacaaacacatgcgtaacaaataaaccaaaccaaagttca-ttcattccttctttccctagtgagtttctttc 40058844  T
Q  334 tctctttttggatcattcattcttcc-aaataattaccatgagagccactgaaattgtgttggttctgctttggttcttaccaacaatgttttgcaccaa 432  Q
    ||| ||||||| |||||||||||||| ||||||||||||||||||||  |||||||||||||||||| ||||||||| |||||| |||||||||||||||    
T  40058845 tctatttttggttcattcattcttccaaaataattaccatgagagcctttgaaattgtgttggttctactttggttcctaccaaaaatgttttgcaccaa 40058944  T
Q  433 tgtggattatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacaggtt 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40058945 tgtggattatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacaggtt 40059038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 144 - 526
Target Start/End: Original strand, 40084605 - 40084976
Alignment:
Q  144 gtattaccttgttcctcctcgtagaatgtacattatatatagctagttagctacacatgttatattacccttgttcttcttctaagcatcatcacttaca 243  Q
    ||||||||||||| |||||| ||||||||||||||||||||            ||| ||||||||||| | |||||||||||||||||||||||||||||    
T  40084605 gtattaccttgtttctcctcatagaatgtacattatatata------------cacgtgttatattactcatgttcttcttctaagcatcatcacttaca 40084692  T
Q  244 tttcacatccacgtgaccnnnnnnncacatgtaacaaataaaccaaaccaaaccaaagtccaatctttccttccctagtgagtttctttttctctttttg 343  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40084693 tttcacatccacgtgaccaaaaaaacacatgtaacaaataaaccaaaccaaaccaaagtccaatctttccttccctagtgagtttctttttctctttttg 40084792  T
Q  344 gatcattcattcttcca-aataattaccatgagagccactgaaattgtgttggttctgctttggttcttaccaacaatgttttgcaccaatgtggattat 442  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40084793 gatcattcattcttctagaataattaccatgagagccactgaaattgtgttggttctgctttggttcttaccaacaatgttttgcaccaatgtggattat 40084892  T
Q  443 gaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacaggtt 526  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40084893 gatcatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacaggtt 40084976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 307 - 526
Target Start/End: Original strand, 40076832 - 40077052
Alignment:
Q  307 tctttccttccctagtgagtttctttttctctttttggatcattcattcttccaaa-taattaccatgagagccactgaaattgtgttggttctgctttg 405  Q
    |||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||  |||||||||||||||||| |||||    
T  40076832 tctttccttcactagtgagtttctttttctctctttggttcattcattcttccaaaataattaccatgagagcctttgaaattgtgttggttctactttg 40076931  T
Q  406 gttcttaccaacaatgttttgcaccaatgtggattatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactac 505  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40076932 gttcctaccaaaaatgttttgcaccaatgtggattatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactac 40077031  T
Q  506 cctcgtagtactccacaggtt 526  Q
    |||||||||||||||||||||    
T  40077032 cctcgtagtactccacaggtt 40077052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 15861181 - 15861133
Alignment:
Q  82 atacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 130  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||||||    
T  15861181 atacatcatttatttaatgaatttaaaaagtgaaaaattgtttataatt 15861133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 39606952 - 39606998
Alignment:
Q  84 acattatttattcattgaatttaaaaagtgaaaaattgtttataatt 130  Q
    |||||||||||||| | |||||||||||| |||||||||||||||||    
T  39606952 acattatttattcaataaatttaaaaagtaaaaaattgtttataatt 39606998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 40076726 - 40076780
Alignment:
Q  208 ttacccttgttcttctt-ctaagcatcatcacttacatttcacatccacgtgacc 261  Q
    |||| |||||||||||| | || ||||||||||||||||||||| ||||||||||    
T  40076726 ttactcttgttcttcttacaaaccatcatcacttacatttcacacccacgtgacc 40076780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 45281537 - 45281492
Alignment:
Q  79 catatacattatttattcattgaatttaaaaagtgaaaaattgttt 124  Q
    |||||| |||||||||||| | |||||||||| |||||||||||||    
T  45281537 catatatattatttattcaataaatttaaaaaatgaaaaattgttt 45281492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 45287998 - 45287953
Alignment:
Q  79 catatacattatttattcattgaatttaaaaagtgaaaaattgttt 124  Q
    |||||| |||||||||||| | |||||||||| |||||||||||||    
T  45287998 catatatattatttattcaataaatttaaaaaatgaaaaattgttt 45287953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 39910533 - 39910475
Alignment:
Q  72 tatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 130  Q
    ||||||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  39910533 tatagaccacatacattatttattcaatgaatctaaaaagtgaaaaattgcttataatt 39910475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 43295959 - 43296004
Alignment:
Q  72 tatagaccatatacattatttattcattgaatttaaaaagtgaaaa 117  Q
    ||||||||| |||||| ||||||| | |||||||||||||||||||    
T  43295959 tatagaccacatacatcatttattgaatgaatttaaaaagtgaaaa 43296004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 30114811 - 30114851
Alignment:
Q  70 tatatagaccatatacattatttattcattgaatttaaaaa 110  Q
    ||||||||||| |||||||| ||||||| ||||||||||||    
T  30114811 tatatagaccaaatacattagttattcaatgaatttaaaaa 30114851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 440 - 527
Target Start/End: Complemental strand, 22016683 - 22016596
Alignment:
Q  440 tatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacaggttc 527  Q
    ||||| ||||||||||||||||||||||||||||| || ||  | || |||||||| ||||| || |||||||| ||||| |||||||    
T  22016683 tatgatcatagagcattggtcattgatggtaaacgcagggttcttatgtctggttccattcattatcctcgtagcactcctcaggttc 22016596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 46462449 - 46462391
Alignment:
Q  72 tatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 130  Q
    |||| ||||||||||| ||||||| | ||||| ||||||||||||| ||| ||||||||    
T  46462449 tataaaccatatacatcatttatttaatgaatctaaaaagtgaaaagttgcttataatt 46462391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 46462461 - 46462509
Alignment:
Q  82 atacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 130  Q
    |||||| ||||||||| ||||  ||||||||||||||||| ||||||||    
T  46462461 atacatcatttattcaatgaacctaaaaagtgaaaaattgcttataatt 46462509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 34500162 - 34500220
Alignment:
Q  72 tatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 130  Q
    ||||||||| || ||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  34500162 tatagaccacatgcattatttattcaatgaatctaaaaagtgaaaaattgcttataatt 34500220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 37096170 - 37096225
Alignment:
Q  73 atagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataa 128  Q
    ||||| || |||||| ||||||||| ||||| |||||||| |||||||||||||||    
T  37096170 atagatcacatacatcatttattcaatgaatctaaaaagtcaaaaattgtttataa 37096225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 47507634 - 47507584
Alignment:
Q  71 atatagaccatatacattatttattcattgaatttaaaaagtgaaaaattg 121  Q
    |||| |||||||||||| ||||||| | ||||| |||||||||||||||||    
T  47507634 atatggaccatatacataatttattaaatgaatctaaaaagtgaaaaattg 47507584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 19771215 - 19771171
Alignment:
Q  71 atatagaccatatacattatttattcattgaatttaaaaagtgaa 115  Q
    ||||||||||||||||  ||||||| | |||||||||||||||||    
T  19771215 atatagaccatatacaacatttattgaatgaatttaaaaagtgaa 19771171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 28456861 - 28456905
Alignment:
Q  86 attatttattcattgaatttaaaaagtgaaaaattgtttataatt 130  Q
    |||||||||||| ||||| ||||||||||||  ||||||||||||    
T  28456861 attatttattcaatgaatctaaaaagtgaaatgttgtttataatt 28456905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 39933403 - 39933348
Alignment:
Q  72 tatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttata 127  Q
    |||||||||||||||||||||||||| |||| ||||||| |||||  |||||||||    
T  39933403 tatagaccatatacattatttattcaatgaaattaaaaattgaaacgttgtttata 39933348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 22626810 - 22626870
Alignment:
Q  70 tatatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 130  Q
    ||||||||||| |||||| |||||||   |||||||||||| |||||| ||||||||||||    
T  22626810 tatatagaccacatacatcatttatttcatgaatttaaaaattgaaaagttgtttataatt 22626870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 110
Target Start/End: Original strand, 27094316 - 27094355
Alignment:
Q  71 atatagaccatatacattatttattcattgaatttaaaaa 110  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  27094316 atatagaccatatacataatttattcaatgaatttaaaaa 27094355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 8955400 - 8955351
Alignment:
Q  81 tatacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 130  Q
    |||| |||||||||||| | |||||||||||| |||| ||||||||||||    
T  8955400 tatatattatttattcaataaatttaaaaagtaaaaagttgtttataatt 8955351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 21488357 - 21488280
Alignment:
Q  71 atatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatttggacctgacggagtatt 148  Q
    |||||||||| ||||||||||||| || |||||| ||||||| ||| |||  |||||| | |||| ||| ||||||||    
T  21488357 atatagaccaaatacattatttatgcaatgaattaaaaaagtcaaatatttcttataaataggacatgagggagtatt 21488280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 13689087 - 13689135
Alignment:
Q  82 atacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 130  Q
    |||||||||||||||| |||| ||||||||| |||||||  ||||||||    
T  13689087 atacattatttattcaatgaacttaaaaagtaaaaaatttcttataatt 13689135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 27385536 - 27385480
Alignment:
Q  73 atagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataat 129  Q
    |||||||| |||||| ||||||||| ||| | ||||||||||||| ||| |||||||    
T  27385536 atagaccacatacatcatttattcaatgagtctaaaaagtgaaaagttgcttataat 27385480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 27115305 - 27115382
Alignment:
Q  71 atatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatttggacctgacggagtatt 148  Q
    |||||||||| |||||| ||||||||| ||||| ||||||||||||  ||| ||||||||  |||| || ||||||||    
T  27115305 atatagaccacatacataatttattcaatgaatctaaaaagtgaaaggttgcttataattgagaccggagggagtatt 27115382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 24163343 - 24163388
Alignment:
Q  71 atatagaccatatacattatttattcattgaatttaaaaagtgaaa 116  Q
    ||||||||||||||||| |||||| || |||||| |||||||||||    
T  24163343 atatagaccatatacatcatttatgcaatgaattaaaaaagtgaaa 24163388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 31741949 - 31742006
Alignment:
Q  70 tatatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttata 127  Q
    |||| |||||| |||||| |||||||   ||||||||||||||||||| |||||||||    
T  31741949 tataaagaccacatacatcatttattagatgaatttaaaaagtgaaaagttgtttata 31742006  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 23852617 - 23852561
Alignment:
Q  72 tatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataa 128  Q
    ||||||||||||||||  ||| || ||||||| |||||||| |||| ||||||||||    
T  23852617 tatagaccatatacatcgtttctttattgaatctaaaaagtaaaaagttgtttataa 23852561  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 133207 - 133257
Alignment:
Q  71 atatagaccatatacattatttattcattgaatttaaaaagtgaaaaattg 121  Q
    |||||||||| ||||||| |||||||| ||||  |||||||||||||||||    
T  133207 atatagaccacatacattgtttattcaatgaacctaaaaagtgaaaaattg 133257  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 43493866 - 43493920
Alignment:
Q  71 atatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgttta 125  Q
    |||| |||||||||||| |||||||   ||||||||||||||||||| |||||||    
T  43493866 atatggaccatatacatcatttattagatgaatttaaaaagtgaaaagttgttta 43493920  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 19227222 - 19227169
Alignment:
Q  74 tagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttata 127  Q
    |||||||||||||| ||||||| | ||||| ||||||||||||| ||| |||||    
T  19227222 tagaccatatacatcatttattaagtgaatctaaaaagtgaaaagttgcttata 19227169  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 153979 - 154036
Alignment:
Q  70 tatatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttata 127  Q
    ||||||||||| |||||| ||||||| | ||||| ||||||||||||| || ||||||    
T  153979 tatatagaccacatacatcatttattaaatgaatctaaaaagtgaaaagttttttata 154036  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 21162473 - 21162433
Alignment:
Q  72 tatagaccatatacattatttattcattgaatttaaaaagt 112  Q
    ||||||||||||||||||||||| || |||||| |||||||    
T  21162473 tatagaccatatacattatttatgcaatgaattaaaaaagt 21162433  T

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