View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12492_low_10 (Length: 521)
Name: NF12492_low_10
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 212 - 509
Target Start/End: Original strand, 34697071 - 34697369
Alignment:
| Q |
212 |
aacaaactgatttaaatcctagtttgaacaannnnnnnatcaaactttacttatgtgtcaaactctaaatttcctatagtcccttcttaaaaaacagaag |
311 |
Q |
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| T |
34697071 |
aacaaactgatttaaatcctagttttaacaatttttttatcaaactttacttatgtgtcaaactctaaattacctatagtcccttcttaaaaaacagaag |
34697170 |
T |
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| Q |
312 |
gtttggacataatatatatcaatatttacatgtgtttgtgtgggcgcgtgtgcgcacacccagaatgtac-gcacggggtatggttatgttctataatat |
410 |
Q |
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| T |
34697171 |
gtttggacaaaatatatatcaatatttacatgtgtttgtgtgggcgcccgtgcgcacacccagaatttaaagcacggggtatggttatgttctataatat |
34697270 |
T |
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| Q |
411 |
ctcatggacgtgtgcaatgttcatggcttcatttggttgatgtttgtgttttcgagttgcatatgactcataaattgttgtatgtgtgtttcacaggtt |
509 |
Q |
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| T |
34697271 |
ctcatggacgtgtgcaatgttcatggcttcatttggttgatgtttgtgctttcgagttgcatatgactcataaattgttgtatgtgtgtttctcaggtt |
34697369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 34695153 - 34695344
Alignment:
| Q |
23 |
acgacagcttcaagtaatgatgatcattcaactgatcttgctcctctccctccggccattgacatgagtgcacctgctgatattccattcctctttactg |
122 |
Q |
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| T |
34695153 |
acgacagcttcaagtaatgatgatcattcaactgatcttgctcctctccctccggccattgacatgagtgcacctgctgatattccattcctctttactg |
34695252 |
T |
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| Q |
123 |
gtgatcaatttcaaggtaataaatattcatttttataaagtgattgaacttaagtggtaaataatttcaattaaagatgaatatttgaaaac |
214 |
Q |
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| T |
34695253 |
gtgatcaatttcaaggtaataaatattaatttttataaagtgattgaacttaagtggtaaataatttcaattaaagatgaatatttgaaaac |
34695344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 34687227 - 34687341
Alignment:
| Q |
23 |
acgacagcttcaagtaatgatgatcattcaactgatcttgctcctctccctccggccattgacatgagtgcacctgctgatattccattcctctttactg |
122 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||| ||||| | |
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| T |
34687227 |
acgacaacttcaagtaatgatgat---tcaactgatcttgctcctctacctccggccattgacatgagtgcacctgttgatgttccattcctttttaccg |
34687323 |
T |
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| Q |
123 |
gtgatcaatttcaaggta |
140 |
Q |
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| T |
34687324 |
gtgatcaacttcaaggta |
34687341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 501
Target Start/End: Original strand, 8285537 - 8285621
Alignment:
| Q |
417 |
gacgtgtgcaatgttcatggcttcatttggttgatgtttgtgttttcgagttgcatatgactcataaattgttgtatgtgtgttt |
501 |
Q |
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| T |
8285537 |
gacgtgtgcaatgtgcatgatttcatttagttgaagtttgtgtttccaagttgcatatgagagatgaattgttatttgtgtgttt |
8285621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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