View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12492_low_11 (Length: 499)
Name: NF12492_low_11
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 183 - 479
Target Start/End: Original strand, 50567813 - 50568116
Alignment:
| Q |
183 |
acgtaactttttggaattggatgccataattttaaggaatgggaataaaaaattaattttaatctgttcttgggggtttctgggtttatgttaataattt |
282 |
Q |
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| T |
50567813 |
acgtaactttttggaattggatgccataattttaaggaataggaataaaaaattaattttaatctgttcttggaggtttctgggtttatgttaataattt |
50567912 |
T |
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| Q |
283 |
ttcaaaatatttgttttttagct-------ttgaagtggaaaatcattcaaatgttagttattttataactaattcaaatttagttgctaagaaactgaa |
375 |
Q |
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| T |
50567913 |
ttcaaaatatttgttttttagctgaagattttgaagtggaaaatcattcaaatgttagttattttataactaattcaaatttagttgctaagaaactgaa |
50568012 |
T |
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| Q |
376 |
attagaatcaaaagcnnnnnnnttgacaaaaatacttataatcatcaaatatatgcattgaaagacatgcatttgaagatggtctaaaccctcaaattat |
475 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50568013 |
attattatcaaaagcaaaaaaattgacaaaaatacttataatcatcaaatatatgcattgaaagacatgcatttgaagatggtctaaaccctcaaattat |
50568112 |
T |
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| Q |
476 |
gtgg |
479 |
Q |
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|||| |
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| T |
50568113 |
gtgg |
50568116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 50567640 - 50567742
Alignment:
| Q |
13 |
gaagcagagacatggcggtgataacgagaggaagaaaggaactccatggactgaagaagaacacaggtatctcaagattctcaaagattttacttcaatt |
112 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50567640 |
gaagccgagacatggcggtgataacgagaggaagaaaggaactccatggactgaagaagaacacaggtatctcaagattctcaaagattttacttcaatt |
50567739 |
T |
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| Q |
113 |
caa |
115 |
Q |
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||| |
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| T |
50567740 |
caa |
50567742 |
T |
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