View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12492_low_13 (Length: 468)
Name: NF12492_low_13
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_low_13 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 2807025 - 2807487
Alignment:
| Q |
1 |
ctcctggatgcggtggagtttcattctacaagattgtaagcctggtcaaaacgttgattcctcgtcatcatatagcatctaagatcctagacattaaggt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2807025 |
ctcctggatgcggtggatcttcattctacaagattgcaagcctggtcaaaactttgattccccgtcatcatatagcatctaagatccgagacattaaggt |
2807124 |
T |
|
| Q |
101 |
gtcggtttgcggaatcaaggaaagaagtgagaggtataacttacaaatttcaaatgaacaaggatcatcaagcagcaacagcactagagaaacagaaaat |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
2807125 |
gtcggttcgcggaatcaaggaaagaagtgagaggtataacttacaaatttcacatgaacaaggatcatcaagccgcaacagcactagagagacagaaaat |
2807224 |
T |
|
| Q |
201 |
ggaagatggcgtgatcctcgactgtcttccctttttattgaagaaagagaaattgtaggatttgaaggcccaagagaagaaatgtctgtttggttattgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2807225 |
ggaagatggcgtgatcctcgactgtcttccctttttattgaagaaagagaaattgtaggatttgaattcccaagagaagaaatgtctgtttggttattgg |
2807324 |
T |
|
| Q |
301 |
agggtgtagctgagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2807325 |
agggtgtagctgagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaac |
2807424 |
T |
|
| Q |
401 |
acactttgattgccgtgcttgcatcgcagtttctcaatcatacactgtgagagggttgatgat |
463 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2807425 |
acactttgattgtcgtgcttgcatcgcagtttctcaatcatacactgtgagagggttgatgat |
2807487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 110 - 454
Target Start/End: Original strand, 2759078 - 2759425
Alignment:
| Q |
110 |
cggaatcaaggaaagaagtgagaggtataacttacaaatttcaaatgaacaaggatcatcaagcagcaacagcactagagaa---acagaaaatggaaga |
206 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| |||| ||||| || ||||| ||| | ||||||||||||| |
|
|
| T |
2759078 |
cggaatcaaggaaagaagcgtgaggtataactttcaaatttcaaatgaacaaggatcctcaaacagcagcaacactaccgaagagaaagaaaatggaaga |
2759177 |
T |
|
| Q |
207 |
tggcgtgatcctcgactgtcttccctttttattgaagaaagagaaattgtaggatttgaaggcccaagagaagaaatgtctgtttggttattggagggtg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||| | | || |||||||||||||||| |
|
|
| T |
2759178 |
tggcgtgatcctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaaaagaagaactatatggttggttattggagggtt |
2759277 |
T |
|
| Q |
307 |
tagctgagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacactt |
406 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||||| || |
|
|
| T |
2759278 |
cagctgaacgcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgccaagctagtttttgacagccaaaaggtaacaacacagtt |
2759377 |
T |
|
| Q |
407 |
tgattgccgtgcttgcatcgcagtttctcaatcatacactgtgagagg |
454 |
Q |
| |
|
|||||| | |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2759378 |
tgattgtcaagcttgcatcgtagtttctcaatcatacactgtgagagg |
2759425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 110 - 463
Target Start/End: Complemental strand, 2838877 - 2838518
Alignment:
| Q |
110 |
cggaatcaaggaaagaagtgagaggtataacttacaaatttcaaatgaacaaggatcatcaagcagca---acagca---ctagagaaacagaaaatgga |
203 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| |||||| || |||| ||||||||||| |
|
|
| T |
2838877 |
cggaatcaagaaaagaagcgagaggtataactttcaaatttcaaatgaacaaggatcctcaagcagcagcaacagcagtcctggagaggcagaaaatgga |
2838778 |
T |
|
| Q |
204 |
agatggcgtgatcctcgactgtcttccctttttattgaagaaagagaaattgtaggatttgaaggcccaagagaagaaatgtctgtttggttattggagg |
303 |
Q |
| |
|
||||||| || |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| | || |||||||||||||| |
|
|
| T |
2838777 |
agatggcacgaccctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaagagaagaaatatatggttggttattggagg |
2838678 |
T |
|
| Q |
304 |
gtgtagctgagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacaca |
403 |
Q |
| |
|
||| |||||||||||| || || || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || | |
|
|
| T |
2838677 |
gtgcagctgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggtaacagcaaa |
2838578 |
T |
|
| Q |
404 |
ctttgattgccgtgcttgcatcgcagtttctcaatcatacactgtgagagggttgatgat |
463 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
2838577 |
ctttgattgttatgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgat |
2838518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 46 - 463
Target Start/End: Original strand, 2748798 - 2749215
Alignment:
| Q |
46 |
tcaaaacgttgattcctcgtcatcatatagcatctaagatcctagacattaaggtgtcggtttgcggaatcaaggaaagaagtgagaggtataacttaca |
145 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| | || | |||||||| | || || | |||||||||||||||||||||||||||||||| || |
|
|
| T |
2748798 |
tcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggtataactttca |
2748897 |
T |
|
| Q |
146 |
aatttcaaatgaacaaggatcatcaagcagcaacagcactagagaaacagaaaatggaagatggcgtgatcctcgactgtcttccctttttattgaagaa |
245 |
Q |
| |
|
||||||| | ||||||||| | |||||||||| |||| |||| | ||||||||||| ||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
2748898 |
aatttcacacgaacaaggaacttcaagcagcattagcataggagagagagaaaatggaaaatggcatgatcctcgactgtcttctctttttattgaagaa |
2748997 |
T |
|
| Q |
246 |
agagaaattgtaggatttgaaggcccaagagaagaaatgtctgtttggttattggagggtgtagctgagcgcacggtgatttcggtggtaggaatgggag |
345 |
Q |
| |
|
| |||| |||| || |||||| ||||| ||||||| |||||| |||||||||||| |||| |||||||||||||||||| || |||||||||||||||| |
|
|
| T |
2748998 |
acagaagttgttggtattgaagtcccaaaagaagaactgtctggttggttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggag |
2749097 |
T |
|
| Q |
346 |
gtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacactttgattgccgtgcttgcatcgcagtttctcaatcatacac |
445 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||| ||| |||| || ||||||||||||| ||||||||| || ||||||||||||| ||||| |
|
|
| T |
2749098 |
gcctaggaaaaaccactcttgccaagctagtttttgaaagcaaaaaggtatcagcacactttgattgtcgtgcttgcgtcacagtttctcaatcttacac |
2749197 |
T |
|
| Q |
446 |
tgtgagagggttgatgat |
463 |
Q |
| |
|
||||||||| ||| |||| |
|
|
| T |
2749198 |
tgtgagaggtttgttgat |
2749215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 29 - 457
Target Start/End: Original strand, 2768852 - 2769283
Alignment:
| Q |
29 |
caagattgtaagcctggtcaaaacgttgattcctcgtcatcatatagcatctaagatcctagacattaaggtgtcggtttgcggaatcaaggaaagaagt |
128 |
Q |
| |
|
|||||||| |||||| ||||||| |||| ||| |||||| | || |||| |||| | ||||||||| |||| || | ||||||||||||||||| |
|
|
| T |
2768852 |
caagattgcaagcctaatcaaaactttgactccccgtcataaaattgcattagagattcaggacattaagttgtcaattcgtggaatcaaggaaagaagc |
2768951 |
T |
|
| Q |
129 |
gagaggtataacttacaaatttcaaatgaacaaggatcatcaagcagca---acagcactagagaaacagaaaatggaagatggcgtgatcctcgactgt |
225 |
Q |
| |
|
|||||||||| ||| |||| |||| ||||||||||||| |||| ||||| |||| | | |||| |||||| ||||||||||||||||||||| ||| |
|
|
| T |
2768952 |
gagaggtatagctttcaaacttcacatgaacaaggatcctcaaacagcaggaacagtagtggagagtcagaaagtggaagatggcgtgatcctcggatgt |
2769051 |
T |
|
| Q |
226 |
cttccctttttattgaagaaagagaaattgtaggatttgaaggcccaagagaagaaatgtctgtttggttattggagggtgtagctgagcgcacggtgat |
325 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| | | || ||||||||||||||||| |||| ||||||| ||||| |
|
|
| T |
2769052 |
cttccctctttattgaagaaacagaaattgtaggattggaaggcccaagagaagaattatttggttggttattggagggtgcagctaagcgcacagtgat |
2769151 |
T |
|
| Q |
326 |
ttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacactttgattgccgtgcttgcatc |
425 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||| |||||| || |||||||||| |||||||||||| |
|
|
| T |
2769152 |
atcagtggtaggaatggggggtctaggaaaaaccactcttgccaaactagtttatgacagccaaaaggtaactgcaaactttgattgtcgtgcttgcatc |
2769251 |
T |
|
| Q |
426 |
gcagtttctcaatcatacactgtgagagggtt |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2769252 |
acagtttctcaatcatacactgtgagagggtt |
2769283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 111 - 463
Target Start/End: Complemental strand, 2856083 - 2855728
Alignment:
| Q |
111 |
ggaatcaaggaaagaagtgagaggtataacttacaaatttcaaatgaacaaggatcatcaagc---agcaacagcactagagaaacagaaaatggaagat |
207 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||| | || |||||||| |||||| || ||| ||| | |||| |||||||||||||||| |
|
|
| T |
2856083 |
ggaatcaaggaaagaagccagaggtataactttcaaatttcacacgagcaaggatcctcaagccaaagaaaccgcagtggagagacagaaaatggaagat |
2855984 |
T |
|
| Q |
208 |
ggcgtgatcctcgactgtcttccctttttattgaagaaagagaaattgtaggatttgaaggcccaagagaagaaatgtctgtttggttattggagggtgt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||| ||||||| |||||||||||| ||||||| |||||| |||||||||||| ||| | |
|
|
| T |
2855983 |
ggcgtgatcctcgactgtcttcccttttcattgaagaaacagaagttgtaggcattgaaggcccaaaagaagaattgtctggttggttattggaaggtat |
2855884 |
T |
|
| Q |
308 |
agctgagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacacttt |
407 |
Q |
| |
|
| ||||||||| |||||||| ||||| |||||||| ||| |||||||||| ||||||||||||||| ||||||| ||||||| |||||||||| ||||| |
|
|
| T |
2855883 |
atctgagcgcaaagtgatttcagtggtgggaatggggggtataggaaaaactactcttgccaagctaatttttgacagccaaaaggtaacaacaaacttt |
2855784 |
T |
|
| Q |
408 |
gattgccgtgcttgcatcgcagtttctcaatcatacactgtgagagggttgatgat |
463 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
2855783 |
gattgtcgtgcttgcatcacagtttctcaatcatacactgtgagaggtttgttgat |
2855728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 111 - 451
Target Start/End: Original strand, 2797226 - 2797569
Alignment:
| Q |
111 |
ggaatcaaggaaagaagtgagaggtataacttacaaatttcaaatgaacaaggatcatcaagcagcaaca---gcactagagaaacagaaaatggaagat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| | || |||||||||||||||||||| ||| |||||| || || ||| |||||| |
|
|
| T |
2797226 |
ggaatcaaggaaagaagtgagaggtataactttcaaatttcacagacaccaggatcatcaagcagcaacaacagcagtagagagacggataatagaagat |
2797325 |
T |
|
| Q |
208 |
ggcgtgatcctcgactgtcttccctttttattgaagaaagagaaattgtaggatttgaaggcccaagagaagaaatgtctgtttggttattggagggtgt |
307 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| || |||||| |||||| ||||||| | ||||| |
|
|
| T |
2797326 |
ggtgtgatcctcgactgtcttccctttttattgaagaaactgcaattgtcggatttgaaggcccgagggaagaattgtctggttggttactagagggcac |
2797425 |
T |
|
| Q |
308 |
agctgagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacacttt |
407 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||| |||||||||| | ||| |
|
|
| T |
2797426 |
agctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagtcaaaaggtaacaacaaaattt |
2797525 |
T |
|
| Q |
408 |
gattgccgtgcttgcatcgcagtttctcaatcatacactgtgag |
451 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
2797526 |
gattgtcgtgcttgcatcacagtttctcaatcatacaccgtgag |
2797569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 111 - 454
Target Start/End: Original strand, 2818422 - 2818768
Alignment:
| Q |
111 |
ggaatcaaggaaagaagtgagaggtataacttacaaatttcaaatgaacaaggatcatcaagc---agcaacagcactagagaaacagaaaatggaagat |
207 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||| ||||||||||||| || || |||||| | | |||| |||| | ||| ||| |
|
|
| T |
2818422 |
ggaatcaaggaaagaagcgagaggtataacttccaaatttcgcatgaacaaggatcctcgtgccaaagcaacggatgtggagagtcagacacaggaggat |
2818521 |
T |
|
| Q |
208 |
ggcgtgatcctcgactgtcttccctttttattgaagaaagagaaattgtaggatttgaaggcccaagagaagaaatgtctgtttggttattggagggtgt |
307 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||| |||||| ||||||||||||||||| ||||||||| | | || ||||||||||||||||| |
|
|
| T |
2818522 |
ggcgtgatcctcgactgtcttctcttttcattgaagaaacagaaatcgtaggatttgaaggcccgagagaagaactatatggttggttattggagggtgc |
2818621 |
T |
|
| Q |
308 |
agctgagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacacttt |
407 |
Q |
| |
|
||| |||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |
|
|
| T |
2818622 |
agccgagcgcacagtgatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgacagccaaaaggtaacaacacagttt |
2818721 |
T |
|
| Q |
408 |
gattgccgtgcttgcatcgcagtttctcaatcatacactgtgagagg |
454 |
Q |
| |
|
||||| || |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2818722 |
gattgtcgagcttgcatcgtagtttctcaatcatacactgtgagagg |
2818768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 29 - 463
Target Start/End: Original strand, 5412690 - 5413106
Alignment:
| Q |
29 |
caagattgtaagcctggtcaaaacgttgattcctcgtcatcatatagcatctaagatcctagacattaaggtgtcggtttgcggaatcaaggaaagaagt |
128 |
Q |
| |
|
|||||||| |||| || ||||||| |||||||| | |||||| ||||||||| |||| | ||||||||| |||| || | |||||||||||||||||| |
|
|
| T |
5412690 |
caagattgcaagcttgatcaaaactttgattccccatcatcagatagcatctgagattcaggacattaagttgtcaattcgtggaatcaaggaaagaagt |
5412789 |
T |
|
| Q |
129 |
gagaggtataacttacaaatttcaaatgaacaaggatcatcaagcagcaacagcactagagaaacagaaaatggaagatggcgtgatcctcgactgtctt |
228 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5412790 |
gagaggtataactttcaaatttcaa------------------gcagcaacagcagtagagagacagaaaatggaagatggcgagatcctcgactgtctt |
5412871 |
T |
|
| Q |
229 |
ccctttttattgaagaaagagaaattgtaggatttgaaggcccaagagaagaaatgtctgtttggttattggagggtgtagctgagcgcacggtgatttc |
328 |
Q |
| |
|
|||| || ||| ||||| |||| |||||||| ||||||| |||| ||||||| |||||| |||||||||||| |||| ||| || || || || || || |
|
|
| T |
5412872 |
ccctattcattacagaaacagaagttgtaggaattgaaggtccaaaagaagaattgtctggttggttattggatggtgcagcggaacgtacagtcatatc |
5412971 |
T |
|
| Q |
329 |
ggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacactttgattgccgtgcttgcatcgca |
428 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| |||| || ||||||||||||| |||||||| | || |
|
|
| T |
5412972 |
agtggtaggaatggggggcctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggtatcagcacactttgattgttgtgcttgcgtaaca |
5413071 |
T |
|
| Q |
429 |
gtttctcaatcatacactgtgagagggttgatgat |
463 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| |
|
|
| T |
5413072 |
gtttctcaatcatacactgtgagaggtttgttgat |
5413106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 23 - 367
Target Start/End: Original strand, 2790144 - 2790491
Alignment:
| Q |
23 |
attctacaagattgtaagcctggtcaaaacgttgattcctcgtcatcatatagcatctaagatcctagacattaaggtgtcggtttgcggaatcaaggaa |
122 |
Q |
| |
|
||||| |||||||| |||||| ||||||| |||||||| | |||||| ||||||||| |||| | |||||||| | || || | |||||||||||| |
|
|
| T |
2790144 |
attctgcaagattgcaagcctaatcaaaactttgattccccatcatcagatagcatctgagattaaaaacattaagatatcaattcgtggaatcaaggaa |
2790243 |
T |
|
| Q |
123 |
agaagtgagaggtataacttacaaatttcaaatgaacaaggatcatcaagca---gcaacagcactagagaaacagaaaatggaagatggcgtgatcctc |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | || |||||||||||||| ||||||||| |||||| || || ||| ||||||||| |||||||| |
|
|
| T |
2790244 |
agaagtgagaggtataactttcaaatttcacagacaccaggatcatcaagcagcagcaacagcagtagagagacggacaatagaagatggcatgatcctc |
2790343 |
T |
|
| Q |
220 |
gactgtcttccctttttattgaagaaagagaaattgtaggatttgaaggcccaagagaagaaatgtctgtttggttattggagggtgtagctgagcgcac |
319 |
Q |
| |
|
| ||||||||||||| |||||||||| | |||||| |||||||||||||| || |||||| |||||| ||||||||||||||| |||||||||||| |
|
|
| T |
2790344 |
ggttgtcttcccttttcattgaagaaactgcaattgtcggatttgaaggcccgagggaagaattgtctggttggttattggagggcacagctgagcgcac |
2790443 |
T |
|
| Q |
320 |
ggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgc |
367 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2790444 |
agtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgc |
2790491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 382
Target Start/End: Original strand, 21945658 - 21945728
Alignment:
| Q |
312 |
gagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttga |
382 |
Q |
| |
|
|||||||| || |||| ||||||||||||||||| | ||||||||||||||| |||||| ||||||||| |
|
|
| T |
21945658 |
gagcgcactgtagtttccgtggtaggaatgggagggcaaggaaaaaccactctagccaagaaagtttttga |
21945728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 382
Target Start/End: Original strand, 22104757 - 22104827
Alignment:
| Q |
312 |
gagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttga |
382 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| | ||||||||| ||||| |||||| ||||||||| |
|
|
| T |
22104757 |
gagcgcactgtagtttcggtggtaggaatgggagggcaaggaaaaacaactctagccaagagagtttttga |
22104827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 22648590 - 22648533
Alignment:
| Q |
312 |
gagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgcca |
369 |
Q |
| |
|
|||||||| || || || |||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
22648590 |
gagcgcactgtcatctctgtggtaggtatgggagggctaggaaaaaccactcttgcca |
22648533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 382
Target Start/End: Original strand, 21930455 - 21930525
Alignment:
| Q |
312 |
gagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttga |
382 |
Q |
| |
|
|||||||| ||| | || ||||||||||||||||| | ||||||||| ||||| |||||| ||||||||| |
|
|
| T |
21930455 |
gagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttga |
21930525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 382
Target Start/End: Original strand, 22028034 - 22028104
Alignment:
| Q |
312 |
gagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttga |
382 |
Q |
| |
|
|||||||| ||| | || ||||||||||||||||| | ||||||||| ||||| |||||| ||||||||| |
|
|
| T |
22028034 |
gagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttga |
22028104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 382
Target Start/End: Original strand, 22034551 - 22034621
Alignment:
| Q |
312 |
gagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttga |
382 |
Q |
| |
|
|||||||| ||| | || ||||||||||||||||| | ||||||||| ||||| |||||| ||||||||| |
|
|
| T |
22034551 |
gagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttga |
22034621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 382
Target Start/End: Original strand, 22052767 - 22052837
Alignment:
| Q |
312 |
gagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttga |
382 |
Q |
| |
|
|||||||| ||| |||| |||||||||||||||| | ||||||||| ||||| |||||| ||||||||| |
|
|
| T |
22052767 |
gagcgcactgtggtttctctggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttga |
22052837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 382
Target Start/End: Original strand, 22187022 - 22187092
Alignment:
| Q |
312 |
gagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttga |
382 |
Q |
| |
|
|||||||| || |||| ||||||||||||||||| | ||||||||| ||||| |||||| ||||||||| |
|
|
| T |
22187022 |
gagcgcactgttctttctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttga |
22187092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 446
Target Start/End: Original strand, 3721626 - 3721747
Alignment:
| Q |
325 |
tttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacactttgattgccgtgcttgcat |
424 |
Q |
| |
|
|||| |||||||| |||||||| || |||||||| |||||||| |||| |||||||||| ||| ||| | || |||||||||||| | ||| ||| |
|
|
| T |
3721626 |
tttctgtggtaggcatgggaggactcggaaaaacaactcttgctaagcatgtttttgataaccagttggtgaaaagccactttgattgctgctctttcat |
3721725 |
T |
|
| Q |
425 |
cgcagtttctcaatcatacact |
446 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
3721726 |
aacagtttctcaatcctacact |
3721747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 21937187 - 21937239
Alignment:
| Q |
312 |
gagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactct |
364 |
Q |
| |
|
|||||||| || |||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
21937187 |
gagcgcactgttgtttctgtggtaggaatgggagggcaaggaaaaaccactct |
21937239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 22115119 - 22115171
Alignment:
| Q |
312 |
gagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactct |
364 |
Q |
| |
|
|||||||| || |||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
22115119 |
gagcgcactgttctttctgtggtaggaatgggagggcaaggaaaaaccactct |
22115171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 22621328 - 22621288
Alignment:
| Q |
330 |
gtggtaggaatgggaggtctaggaaaaaccactcttgccaa |
370 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||||||||||| |
|
|
| T |
22621328 |
gtggtaggaatgggaggacaaggaaaatccactcttgccaa |
22621288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 29 - 457
Target Start/End: Complemental strand, 6507 - 6076
Alignment:
| Q |
29 |
caagattgtaagcctggtcaaaacgttgattcctcgtcatcatatagcatctaagatcctagacattaaggtgtcggtttgcggaatcaaggaaagaagt |
128 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||| ||||| ||||||||| |||| | ||||| ||| |||| || | ||||||||||| |||||| |
|
|
| T |
6507 |
caagattgtaagcctaatcaaaactttgatttctcagcatcagatagcatctgagattcaggacataaagctgtcaattcgtggaatcaaggacagaagt |
6408 |
T |
|
| Q |
129 |
gagaggtataacttacaaatttcaaatgaacaaggatcatcaag---cagcaacagcactagagaaacagaaaatggaagatggcgtgatcctcgactgt |
225 |
Q |
| |
|
|| ||||||||||| ||||||| | |||||| ||||||||||| ||||| |||||| |||| ||||||||||||||||||||||||||||| | | |
|
|
| T |
6407 |
gaaaggtataactttcaaattttacatgaacctggatcatcaagtgtcagcagcagcacaggagaggcagaaaatggaagatggcgtgatcctcgattat |
6308 |
T |
|
| Q |
226 |
cttccctttttattgaagaaagagaaattgtaggatttgaaggcccaagagaagaaatgtctgtttggttattggagggtgtagctgagcgcacggtgat |
325 |
Q |
| |
|
|| |||||||||||||||||| ||| |||||||||| |||||||||||||| ||| | | || ||||||||||||| || |||||||||||| || || |
|
|
| T |
6307 |
ctgccctttttattgaagaaactgaagttgtaggattcgaaggcccaagagaggaattatatggttggttattggagagtccagctgagcgcaccgtaat |
6208 |
T |
|
| Q |
326 |
ttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacactttgattgccgtgcttgcatc |
425 |
Q |
| |
|
||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||| |||||||||||| |
|
|
| T |
6207 |
ttcagtggtaggaatgggaggtatagggaaaaccactcttgccaagctagtttttgacagccaaaaggtaacaacacaatttgattgtcgtgcttgcatc |
6108 |
T |
|
| Q |
426 |
gcagtttctcaatcatacactgtgagagggtt |
457 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| |
|
|
| T |
6107 |
gcagtttctcaaacatacaccgtgagagggtt |
6076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 382
Target Start/End: Original strand, 27294595 - 27294652
Alignment:
| Q |
325 |
tttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttga |
382 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||||||||| | |||| ||||||||| |
|
|
| T |
27294595 |
tttctgtggtaggaatgggaggacaaggaaaaaccactctagtcaagaaagtttttga |
27294652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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