View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12492_low_15 (Length: 451)
Name: NF12492_low_15
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 12 - 443
Target Start/End: Complemental strand, 51054428 - 51053997
Alignment:
| Q |
12 |
tcatcaattacgataattttctctcagaatcgcataggtaaagtttcttttttcttcacatgttttgaaaactcaattcgaaacggtaattcgttaagat |
111 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51054428 |
tcatcgattacgataaatttctctcagaatcgcataggtaaagtttcttttttcttcacatgttttgaaaactcaattcgaaacggtaattcgttaagat |
51054329 |
T |
|
| Q |
112 |
tcacacattgtgatttgaaatcgaagcttaacgatatcgtttttggttcattgttgagttgnnnnnnngcaggtttaagaagaaacgttgatacgttcat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
51054328 |
tcacacattgtgatttgaaatcgaagcttaacgatatcgtttttggttcattgttgagttgcttttttgcaggtttaagaagaaacgttgatacgttcat |
51054229 |
T |
|
| Q |
212 |
ggagaagagcgaaacgacgctggatttagctaatcggaaatttgcgcggcaattggatttcgccgccgcatgtggaggtccgtcgtacctgacattgtcg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51054228 |
ggagaagagcgaaacgacgctggatttagctaatcggaaatttgcgcggcaattggatttcgccgccgcatgtggaggtccgtcgtacctgacattgtcg |
51054129 |
T |
|
| Q |
312 |
ccaccgacgccgcagtcactgtcaaaaaccattccacgacctccgacaccgtcgtatttgccacctccggcgcaaatgcatttggattttcagtcaccag |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51054128 |
ccaccgacgccgcagtcactgtcaaaaaccattccacgacctccgacaccgtcgtatttgccacctccggcgcaaatgcatttggattttcagtcaccag |
51054029 |
T |
|
| Q |
412 |
tgagacggccgtggaaacaatcaccaccacag |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
51054028 |
tgagacggccgtggaaacaatcaccaccacag |
51053997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University