View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12492_low_16 (Length: 450)
Name: NF12492_low_16
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_low_16 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 235 - 418
Target Start/End: Original strand, 929746 - 929929
Alignment:
| Q |
235 |
aaccattttaatatgcgacactatgccgcttacattcattgagtttccttcaaagataatttgatttctacctagcaaaatgcattagattgtatccatc |
334 |
Q |
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| T |
929746 |
aaccattttaatatgcgacactatgccgcttacattcattgagtttccttcaaagataatttgatttctacctagaaaaatgcattagattgtatccatc |
929845 |
T |
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| Q |
335 |
catacacgataaatgtgagaatttcctacctttcttcccacctttgataccacaatgttgcaaaaattgagagcacaggttctg |
418 |
Q |
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| T |
929846 |
catacacgataaatgtgagaatttcctacctttcttaccacctttgataccacaatgttgcaaaaattgagagcacgggttctg |
929929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 929362 - 929441
Alignment:
| Q |
66 |
ataagaaacagtaagacgatgaaataagtcacaataaggaccttgtgaagtttttgtatgatatgaaaaatgtatcatga |
145 |
Q |
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| T |
929362 |
ataaaaaacagtaagacgatgaaataagtcacaattaggaccttgtgaagtttttgtatgatatgaaaaatgtatcatga |
929441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 929270 - 929340
Alignment:
| Q |
1 |
aagccaaacattcgggcacaacagccgaacttagacggtcttctgaaacattaaagaaagtccgaataaga |
71 |
Q |
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| T |
929270 |
aagccaaacattcgggcacaacagccgaacttagacggtcttctgaaacattaaagaaagtccgagtaaga |
929340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 1201614 - 1201514
Alignment:
| Q |
44 |
tgaaacattaaagaaagtccgaataaga----aacagtaagacgatgaaataagtcacaataaggaccttgtgaagtttttgtatgatatgaaaaatgta |
139 |
Q |
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| T |
1201614 |
tgaaacattaaagataatctgaataagattaaaacagtaagacaatgcaataactcacaatcaggacctcgtgaagtttttgtatgatatgaaaaatgta |
1201515 |
T |
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| Q |
140 |
t |
140 |
Q |
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| T |
1201514 |
t |
1201514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1201682 - 1201640
Alignment:
| Q |
1 |
aagccaaacattcgggcacaacagccgaacttagacggtcttc |
43 |
Q |
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| T |
1201682 |
aagccaaacattcgggcacaacagcagaacttagacgctcttc |
1201640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 929642 - 929676
Alignment:
| Q |
188 |
ataaccgtttaacggtttagtcctcgattccatcc |
222 |
Q |
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| T |
929642 |
ataacagtttaacggtttagtcctcgattccatcc |
929676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 24981 - 24919
Alignment:
| Q |
344 |
taaatgtgagaatttcctacctttcttcccacctttgataccacaatgttgcaaaaattgaga |
406 |
Q |
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| T |
24981 |
taaatgtgagcatttcctatctttcttaccacctttgataccacagtgttgcaataaatgaga |
24919 |
T |
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