View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12492_low_17 (Length: 394)
Name: NF12492_low_17
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 47909337 - 47909030
Alignment:
| Q |
19 |
caacgacggttcaatggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagcatataa |
118 |
Q |
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| T |
47909337 |
caacgacggttcaatggggtggacaagtatttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagcatataa |
47909238 |
T |
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| Q |
119 |
taaatataagcacgcatgctatatgggcgctgtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcct |
218 |
Q |
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| T |
47909237 |
taaatataagcacgcatgctatatgggcgcagtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcct |
47909138 |
T |
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| Q |
219 |
gagtgttacagtgccctaaatattgctccatatggaaaagaccctgtgttcttctttggaggggccggacgacaacctcgttattgtccttgaacttgca |
318 |
Q |
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| T |
47909137 |
gagtgttacagtgccctaaatattgctccatatggaaaagaccctgtgttcttctttggaggggccggacgacaacctcgttattgtccttgaacttgca |
47909038 |
T |
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| Q |
319 |
gcatgtta |
326 |
Q |
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|||||||| |
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| T |
47909037 |
gcatgtta |
47909030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 26 - 313
Target Start/End: Complemental strand, 47918493 - 47918209
Alignment:
| Q |
26 |
ggttcaatggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagcatataataaatat |
125 |
Q |
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| T |
47918493 |
ggttcaatggggtggacaagtgtttagttatgaggtcaaaaaaa---ctcctcacactggaacacaaatgggtagtggagaagaagcatataataaattt |
47918397 |
T |
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| Q |
126 |
aagcacgcatgctatatgggcgctgtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgagtgtt |
225 |
Q |
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| T |
47918396 |
ggggttgcatgttacatgggtggtgtgagaatcaaagataattcgcaagcacttaagtacccatcatttgtaagtacacatgctatagaaccatattgtt |
47918297 |
T |
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| Q |
226 |
acagtgccctaaatattgctccatatggaaaagaccctgtgttcttctttggaggggccggacgacaacctcgttattgtccttgaac |
313 |
Q |
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| T |
47918296 |
acagtgccttcaatgatgctccatatggaaaagatcctgtattctattttggaggtgctggacgaaggcctcctcattgtccttgaac |
47918209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 28 - 280
Target Start/End: Complemental strand, 47928256 - 47928004
Alignment:
| Q |
28 |
ttcaatggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagcatataataaatataa |
127 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| |||||||| | |||| | | || | |
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| T |
47928256 |
ttcaatggggtggacaagtgtttagttatgaggtcaaaacaaaacctcctcacacaggaacacagatgggtagtggagatgcagcaagtggtcgatttgg |
47928157 |
T |
|
| Q |
128 |
gcacgcatgctatatgggcgctgtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgagtgttac |
227 |
Q |
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| T |
47928156 |
ggccgcatgttacatgggtagtgtgagaattaaagattattcacaagctcttaagtatccatcatttgtaagtacacatgctgcagaaccatattgttac |
47928057 |
T |
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| Q |
228 |
agtgccctaaatattgctccatatggaaaagaccctgtgttcttctttggagg |
280 |
Q |
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| T |
47928056 |
agtgccctcaatgacgctccatatggaaaagatcctgtattctactttggagg |
47928004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 314
Target Start/End: Complemental strand, 47946834 - 47946546
Alignment:
| Q |
26 |
ggttcaatggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagcatataataaatat |
125 |
Q |
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||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||| |||||||||| |||| | | || | |
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| T |
47946834 |
ggttcaatggggtggacaagtgtttagttataatgtgaaaacaacccctcctcacacaggaacacaaatgggtagtggagaagcagcaagtggtcgattt |
47946735 |
T |
|
| Q |
126 |
aagcacgcatgctatatgggcgctgtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgagtgtt |
225 |
Q |
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| T |
47946734 |
gggttcgcatgttacatgacaaatgtgagaattaaggattattcagaaactctcaagtatccacaatttgtaagtacatatgcagcagaaccttactgtt |
47946635 |
T |
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| Q |
226 |
acagtgccctaaatattgctccatatggaaaagaccctgtgttcttctttggaggggccggacgacaacctcgttattgtccttgaact |
314 |
Q |
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| T |
47946634 |
acagtgccctcaacgatgttcaatatggaaaagatcctgtcttcttttttggaggacctgggcgaagacctccatattgtccttgaact |
47946546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 47935692 - 47935605
Alignment:
| Q |
26 |
ggttcaatggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagca |
113 |
Q |
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|||||||||||| |||||||||||||||||| ||| ||||| | |||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
47935692 |
ggttcaatggggaggacaagtgtttagttatcaggtcaaaactacccctcctcacacaggaacacagatgggtagtggagaagaagca |
47935605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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