View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12492_low_19 (Length: 368)

Name: NF12492_low_19
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12492_low_19
NF12492_low_19
[»] chr4 (18 HSPs)
chr4 (19-291)||(23868733-23869005)
chr4 (19-291)||(24307224-24307496)
chr4 (19-295)||(23408545-23408821)
chr4 (19-295)||(23453377-23453653)
chr4 (19-295)||(23402071-23402347)
chr4 (19-291)||(23415714-23415986)
chr4 (19-291)||(23885828-23886100)
chr4 (19-291)||(26832736-26833008)
chr4 (19-291)||(26434025-26434297)
chr4 (19-291)||(26435805-26436077)
chr4 (19-291)||(34662046-34662318)
chr4 (70-202)||(23451788-23451920)
chr4 (329-368)||(24307147-24307186)
chr4 (326-368)||(23401998-23402040)
chr4 (326-368)||(23408852-23408894)
chr4 (335-368)||(26433948-26433981)
chr4 (335-368)||(26435728-26435761)
chr4 (335-368)||(26832659-26832692)
[»] chr1 (6 HSPs)
chr1 (21-291)||(41670401-41670671)
chr1 (35-294)||(40795767-40796026)
chr1 (20-143)||(33216594-33216717)
chr1 (41-291)||(29391467-29391717)
chr1 (163-199)||(33216558-33216594)
chr1 (19-96)||(45576399-45576476)
[»] chr7 (3 HSPs)
chr7 (20-143)||(47317431-47317554)
chr7 (53-291)||(40180309-40180547)
chr7 (163-199)||(47317395-47317431)
[»] chr2 (1 HSPs)
chr2 (56-108)||(14715433-14715485)
[»] chr8 (1 HSPs)
chr8 (166-291)||(29684701-29684826)


Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 23869005 - 23868733
Alignment:
Q  19 ctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  23869005 ctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaatttcc 23868906  T
Q  119 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23868905 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattccca 23868806  T
Q  219 tggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 291  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||    
T  23868805 tggctttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23868733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 24307496 - 24307224
Alignment:
Q  19 ctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcc 118  Q
    |||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24307496 ctaagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtctgaatttcc 24307397  T
Q  119 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  24307396 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattccca 24307297  T
Q  219 tggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 291  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||    
T  24307296 tggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttc 24307224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 23408545 - 23408821
Alignment:
Q  19 ctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcc 118  Q
    |||||| ||||| |||||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||    
T  23408545 ctaagagctagtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttcc 23408644  T
Q  119 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  23408645 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccca 23408744  T
Q  219 tggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca 295  Q
    | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  23408745 tcgctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctaca 23408821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 23453377 - 23453653
Alignment:
Q  19 ctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcc 118  Q
    |||||||||||| ||||| |||||||| || || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23453377 ctaagaactagtaaacttggtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaatttcc 23453476  T
Q  119 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  23453477 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccca 23453576  T
Q  219 tggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca 295  Q
    |||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||    
T  23453577 tggccttgcttgagataccaatgtctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctaca 23453653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 23402347 - 23402071
Alignment:
Q  19 ctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcc 118  Q
    |||||||||||| ||||| ||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23402347 ctaagaactagtaaacttggtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttcc 23402248  T
Q  119 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  23402247 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccca 23402148  T
Q  219 tggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca 295  Q
    |||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||    
T  23402147 tggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctaca 23402071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 23415714 - 23415986
Alignment:
Q  19 ctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcc 118  Q
    |||||| ||||| |||||||||||||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23415714 ctaagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcc 23415813  T
Q  119 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  23415814 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccca 23415913  T
Q  219 tggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 291  Q
    |||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||    
T  23415914 tggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23415986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 23886100 - 23885828
Alignment:
Q  19 ctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcc 118  Q
    |||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23886100 ctaagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttcc 23886001  T
Q  119 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  23886000 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccca 23885901  T
Q  219 tggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 291  Q
    |||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||    
T  23885900 tggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23885828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 26833008 - 26832736
Alignment:
Q  19 ctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcc 118  Q
    |||||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||||| || |||||||| ||||| || ||||||||||||    
T  26833008 ctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcc 26832909  T
Q  119 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||||    
T  26832908 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgataccca 26832809  T
Q  219 tggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 291  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  26832808 tggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26832736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 26434297 - 26434025
Alignment:
Q  19 ctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcc 118  Q
    |||||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||||| || |||||||| ||||| || ||||||||||||    
T  26434297 ctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcc 26434198  T
Q  119 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||||    
T  26434197 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgataccca 26434098  T
Q  219 tggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 291  Q
    |||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||    
T  26434097 tggctttgcttgagataccaatgtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26434025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 26436077 - 26435805
Alignment:
Q  19 ctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcc 118  Q
    ||||||||| || |||||||| ||||| || || || ||||||||| ||||||||||||||||||| || |||||||| ||||| || ||||||||||||    
T  26436077 ctaagaactggtaaacttagtgacagccttggtaccctcagaaacatcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcc 26435978  T
Q  119 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||  || |||||||||||||||||||||||||||||||| || ||||    
T  26435977 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgataccca 26435878  T
Q  219 tggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 291  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  26435877 tggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26435805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 34662046 - 34662318
Alignment:
Q  19 ctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcc 118  Q
    ||||||||| || ||||| || |||||||| || || ||||| ||||||||||| |||||||| |||||||||||||| || || |||||||||||||||    
T  34662046 ctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttcc 34662145  T
Q  119 cttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccca 218  Q
    || ||||| || || ||||||||||| || |  ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||    
T  34662146 ctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataataccca 34662245  T
Q  219 tggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 291  Q
    ||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||| |||||    
T  34662246 tggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttc 34662318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 70 - 202
Target Start/End: Original strand, 23451788 - 23451920
Alignment:
Q  70 cttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattct 169  Q
    ||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||    
T  23451788 cttggccaattcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattct 23451887  T
Q  170 tgagcaagcttctcgaagatatcattgatgaaa 202  Q
    ||||| |||||||| |||||||| |||||||||    
T  23451888 tgagcgagcttctcaaagatatcgttgatgaaa 23451920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 329 - 368
Target Start/End: Complemental strand, 24307186 - 24307147
Alignment:
Q  329 gcagcggaaccaccttcctttggtagcttctttccggcct 368  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  24307186 gcagcggaaccaccttcctttggtagcttctttcctgcct 24307147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 23402040 - 23401998
Alignment:
Q  326 cctgcagcggaaccaccttcctttggtagcttctttccggcct 368  Q
    ||||| || ||||||||||||||||||||||||||||| ||||    
T  23402040 cctgctgcagaaccaccttcctttggtagcttctttcctgcct 23401998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 23408852 - 23408894
Alignment:
Q  326 cctgcagcggaaccaccttcctttggtagcttctttccggcct 368  Q
    ||||| || ||||||||||||||||||||||||||||| ||||    
T  23408852 cctgctgcagaaccaccttcctttggtagcttctttcctgcct 23408894  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 368
Target Start/End: Complemental strand, 26433981 - 26433948
Alignment:
Q  335 gaaccaccttcctttggtagcttctttccggcct 368  Q
    ||||||||||||||||| ||||||||||||||||    
T  26433981 gaaccaccttcctttggaagcttctttccggcct 26433948  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 368
Target Start/End: Complemental strand, 26435761 - 26435728
Alignment:
Q  335 gaaccaccttcctttggtagcttctttccggcct 368  Q
    ||||||||||||||||| ||||||||||||||||    
T  26435761 gaaccaccttcctttggaagcttctttccggcct 26435728  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 368
Target Start/End: Complemental strand, 26832692 - 26832659
Alignment:
Q  335 gaaccaccttcctttggtagcttctttccggcct 368  Q
    ||||||||||||||||| ||||||||||||||||    
T  26832692 gaaccaccttcctttggaagcttctttccggcct 26832659  T

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Target: chr1 (Bit Score: 99; Significance: 9e-49; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 21 - 291
Target Start/End: Complemental strand, 41670671 - 41670401
Alignment:
Q  21 aagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccct 120  Q
    |||| |||||||| || || ||||| || ||||| ||||| ||||||||||| || | |||||| || |||||||| |  || |||||||| || ||||     
T  41670671 aagagctagtgaatttggtaacagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccg 41670572  T
Q  121 tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatg 220  Q
     ||||||||||| |||||||||||||| |  ||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||| || |||||     
T  41670571 agaagtgattgtaggcttcttgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccata 41670472  T
Q  221 gctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 291  Q
    || |||||||||||||||||||| || ||||| || || || || ||||| |||||||||||||| |||||    
T  41670471 gccttgcttgagataccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttc 41670401  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 35 - 294
Target Start/End: Complemental strand, 40796026 - 40795767
Alignment:
Q  35 ttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttg 134  Q
    ||||| || ||||| ||||| || || ||||| |||||||| | ||| || |||||||| || |  || ||||||||||| || |  || ||||| || |    
T  40796026 ttagtgactgctttggttccctcggagacagcgtgcttggcaagttcgccgggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtag 40795927  T
Q  135 gcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagat 234  Q
    | ||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| || ||||| || ||||| |||||    
T  40795926 gtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccatagccttgctggagat 40795827  T
Q  235 accaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctac 294  Q
     |||||||| || ||||| || || || || ||||| |||||||||||||| ||||||||    
T  40795826 tccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctac 40795767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 33216717 - 33216594
Alignment:
Q  20 taagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccc 119  Q
    ||||||| ||| ||||| |||||||| || || || |||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||| ||    
T  33216717 taagaaccagtaaacttggtcacagccttggtaccctcagaaacagcatgtttggccaattcaccaagaagaacaagtctgacagcagtttgaattttcc 33216618  T
Q  120 ttgaagtgattgttggcttcttgt 143  Q
    ||||||||||||||||||||||||    
T  33216617 ttgaagtgattgttggcttcttgt 33216594  T

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Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 291
Target Start/End: Complemental strand, 29391717 - 29391467
Alignment:
Q  41 acagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct 140  Q
    ||||| || |||||||| ||||||||||| || ||||||||||| |||||||| |  |  || || || ||||| ||||| || || || || || ||||    
T  29391717 acagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaaccaaacgcacagccgtttgaatctccctcgacgtaatcgtcggtttct 29391618  T
Q  141 tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat 240  Q
    ||||||||||||| | ||| || | ||| ||||| || ||||| |||||||||||||||||||||||||| || ||||| ||||||   || ||||| ||    
T  29391617 tgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatacctat 29391518  T
Q  241 gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 291  Q
     || || ||||| ||||| || || ||||| ||||| ||||| || |||||    
T  29391517 atcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttc 29391467  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 33216594 - 33216558
Alignment:
Q  163 tgattcttgagcaagcttctcgaagatatcattgatg 199  Q
    ||||||||||||||||||| |||||||||||||||||    
T  33216594 tgattcttgagcaagcttcacgaagatatcattgatg 33216558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 45576476 - 45576399
Alignment:
Q  19 ctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaag 96  Q
    |||||| || ||||| || ||||||||||| || || ||||||||| ||||||| ||||||||| | || ||||||||    
T  45576476 ctaagagcttgtgaatttggtcacagctttggtaccctcagaaacaacatgcttagccaattcatcgggcagaacaag 45576399  T

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Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 47317554 - 47317431
Alignment:
Q  20 taagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccc 119  Q
    ||||||||||| ||||| ||||||||||| || || ||||||||| |||| |||||||||||||||||||||| |||||||||  |||| ||||||||||    
T  47317554 taagaactagtaaacttggtcacagctttggtaccctcagaaacaacatgtttggccaattcaccaggaagaataagtctgacaacagtttgaatttccc 47317455  T
Q  120 ttgaagtgattgttggcttcttgt 143  Q
    ||||||||||||||||||||||||    
T  47317454 ttgaagtgattgttggcttcttgt 47317431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 53 - 291
Target Start/End: Original strand, 40180309 - 40180547
Alignment:
Q  53 ccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgag 152  Q
    ||||||||||||||||| || |||||||| ||||||||||| | ||| || ||||| ||||| ||||| ||||| || || ||||||||||| || | ||    
T  40180309 ccttcagaaacagcatgtttagccaattctccaggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttcttgttatacctag 40180408  T
Q  153 caagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaac 252  Q
    | |  |  || ||||| ||||| || ||||| |||||||| || |||||||||||||| |||||||| || |||||||| | ||| || || || |||||    
T  40180409 ccaaacgagacgattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaac 40180508  T
Q  253 ttgtttcagtactttgaatatgtagatcttgtatgtttc 291  Q
     |||||||| || ||||| ||||| |||||||| |||||    
T  40180509 ctgtttcagaaccttgaagatgtatatcttgtaggtttc 40180547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 47317431 - 47317395
Alignment:
Q  163 tgattcttgagcaagcttctcgaagatatcattgatg 199  Q
    ||||||||||||||||||| |||||||||||||||||    
T  47317431 tgattcttgagcaagcttcacgaagatatcattgatg 47317395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 14715485 - 14715433
Alignment:
Q  56 tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagt 108  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||    
T  14715485 tcagacacaacatgcttggccaattctccaggaagaacaagtctcactgcagt 14715433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 291
Target Start/End: Complemental strand, 29684826 - 29684701
Alignment:
Q  166 ttcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtact 265  Q
    ||||||||| || ||||  |||||||| || | ||||||||| || | |||||| ||||| ||||| | ||||||| | || ||||||||||| || ||     
T  29684826 ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc 29684727  T
Q  266 ttgaatatgtagatcttgtatgtttc 291  Q
    |||||||| || |||||||| |||||    
T  29684726 ttgaatatatatatcttgtaggtttc 29684701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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