View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12492_low_24 (Length: 322)

Name: NF12492_low_24
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12492_low_24
NF12492_low_24
[»] chr3 (6 HSPs)
chr3 (9-258)||(42545564-42545813)
chr3 (64-153)||(22214661-22214751)
chr3 (124-158)||(2128255-2128289)
chr3 (71-152)||(36646385-36646467)
chr3 (125-158)||(39723237-39723270)
chr3 (124-153)||(40665468-40665497)
[»] chr8 (3 HSPs)
chr8 (89-158)||(14949869-14949939)
chr8 (122-158)||(3254262-3254298)
chr8 (124-158)||(20672789-20672823)
[»] chr6 (8 HSPs)
chr6 (120-158)||(22743516-22743554)
chr6 (123-158)||(4420681-4420716)
chr6 (71-106)||(28088272-28088307)
chr6 (124-158)||(821838-821872)
chr6 (71-105)||(3204593-3204627)
chr6 (125-158)||(696642-696675)
chr6 (71-104)||(29274281-29274314)
chr6 (71-158)||(8035145-8035233)
[»] chr2 (2 HSPs)
chr2 (83-158)||(32821806-32821882)
chr2 (71-112)||(9556224-9556265)
[»] chr1 (9 HSPs)
chr1 (122-159)||(30257720-30257757)
chr1 (124-158)||(4481969-4482003)
chr1 (124-158)||(6292532-6292566)
chr1 (124-158)||(37593681-37593715)
chr1 (76-153)||(50318852-50318930)
chr1 (124-153)||(31517742-31517771)
chr1 (73-106)||(48830126-48830159)
chr1 (122-158)||(4699612-4699648)
chr1 (118-158)||(24460404-24460444)
[»] chr7 (7 HSPs)
chr7 (123-158)||(36598353-36598388)
chr7 (125-158)||(11048067-11048100)
chr7 (71-112)||(21453279-21453320)
chr7 (127-160)||(26333308-26333341)
chr7 (125-158)||(43219641-43219674)
chr7 (123-159)||(9423590-9423626)
chr7 (124-160)||(25130084-25130120)
[»] scaffold0608 (1 HSPs)
scaffold0608 (124-158)||(9634-9668)
[»] chr5 (6 HSPs)
chr5 (124-158)||(17258880-17258914)
chr5 (123-152)||(11615539-11615568)
chr5 (118-158)||(4855731-4855771)
chr5 (123-151)||(12521566-12521594)
chr5 (122-158)||(12595713-12595749)
chr5 (123-151)||(28413288-28413316)
[»] chr4 (6 HSPs)
chr4 (123-160)||(17223031-17223068)
chr4 (76-152)||(45128313-45128390)
chr4 (123-159)||(8469373-8469409)
chr4 (71-111)||(20907332-20907372)
chr4 (124-160)||(25571299-25571335)
chr4 (124-160)||(48719386-48719422)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 42545564 - 42545813
Alignment:
Q  9 cagaacctgtgtataagttatttttataacaaattaataaacaaagtcaaactgttataagatgttttcatataagctagaaactgttttcataagctct 108  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42545564 cagaacctatgtataagttatttttataacaaattaataaacaaagtcaaactgttataagatgttttcatataagctagaaactgttttcataagctct 42545663  T
Q  109 cctaaaatattacagaaataagctgaaaacagcttatgaacatgtaataaacagaccctgacgatgcgatctatgcatatattaaacaaataattcacaa 208  Q
    |||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42545664 cctagaagattacggaaataagctgaaaacagcttatgaacatgtaataaacagaccctaacgatgcgatctatgcatatattaaacaaataattcacaa 42545763  T
Q  209 taaagtacaaattttcaactttaccaaatcaagatgaaattattagtatg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42545764 taaagtacaaattttcaactttaccaaatcaagatgaaattattagtatg 42545813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 22214751 - 22214661
Alignment:
Q  64 tataagatgttttcatataagctagaaactgttttcataagctctcctaaa-atattacagaaataagctgaaaacagcttatgaacatgt 153  Q
    |||||| ||||||||||||| ||| ||  |||||||||||||| ||||| | | ||||| |||||||||||||||||||||||| ||||||    
T  22214751 tataagttgttttcatataacctataagttgttttcataagctatcctagagacattacggaaataagctgaaaacagcttatggacatgt 22214661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 2128289 - 2128255
Alignment:
Q  124 aaataagctgaaaacagcttatgaacatgtaataa 158  Q
    |||||||||||||||||||||||||||||| ||||    
T  2128289 aaataagctgaaaacagcttatgaacatgttataa 2128255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 36646467 - 36646385
Alignment:
Q  71 tgttttcatataagctagaaactgttttcataagctctcctaaa-atattacagaaataagctgaaaacagcttatgaacatg 152  Q
    |||||||||||||| || ||  |||||||||||||| ||||| | |  ||| ||||||||| ||||||||||||||| |||||    
T  36646467 tgttttcatataagttataacttgttttcataagctatcctagagagtttatagaaataagatgaaaacagcttatggacatg 36646385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 39723270 - 39723237
Alignment:
Q  125 aataagctgaaaacagcttatgaacatgtaataa 158  Q
    ||||||||||||||||||||||||||||| ||||    
T  39723270 aataagctgaaaacagcttatgaacatgtcataa 39723237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Original strand, 40665468 - 40665497
Alignment:
Q  124 aaataagctgaaaacagcttatgaacatgt 153  Q
    ||||||||||||||||||||||||||||||    
T  40665468 aaataagctgaaaacagcttatgaacatgt 40665497  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 14949869 - 14949939
Alignment:
Q  89 aaactgttttcataagctctcctaaa-atattacagaaataagctgaaaacagcttatgaacatgtaataa 158  Q
    ||||| |||||||||||| ||||||| | |||| ||||||||||||||||||||||||| |||||| ||||    
T  14949869 aaactcttttcataagctatcctaaagagattatagaaataagctgaaaacagcttatggacatgtcataa 14949939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 3254262 - 3254298
Alignment:
Q  122 agaaataagctgaaaacagcttatgaacatgtaataa 158  Q
    |||||||||||||||||||||||||||||||| ||||    
T  3254262 agaaataagctgaaaacagcttatgaacatgtcataa 3254298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 20672789 - 20672823
Alignment:
Q  124 aaataagctgaaaacagcttatgaacatgtaataa 158  Q
    |||||||||||||||||||||||||||||| ||||    
T  20672789 aaataagctgaaaacagcttatgaacatgtcataa 20672823  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 22743516 - 22743554
Alignment:
Q  120 acagaaataagctgaaaacagcttatgaacatgtaataa 158  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22743516 acagaaataagctgaaaacagcttatgaacatgtaataa 22743554  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 4420681 - 4420716
Alignment:
Q  123 gaaataagctgaaaacagcttatgaacatgtaataa 158  Q
    ||||||||||||||||||||||||||||||| ||||    
T  4420681 gaaataagctgaaaacagcttatgaacatgtcataa 4420716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 28088307 - 28088272
Alignment:
Q  71 tgttttcatataagctagaaactgttttcataagct 106  Q
    ||||||||||||||||| ||||||||||||||||||    
T  28088307 tgttttcatataagctataaactgttttcataagct 28088272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 821838 - 821872
Alignment:
Q  124 aaataagctgaaaacagcttatgaacatgtaataa 158  Q
    |||||||||||||||||||||||||||||| ||||    
T  821838 aaataagctgaaaacagcttatgaacatgtcataa 821872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 3204627 - 3204593
Alignment:
Q  71 tgttttcatataagctagaaactgttttcataagc 105  Q
    ||||||||||||||||||||| |||||||||||||    
T  3204627 tgttttcatataagctagaaattgttttcataagc 3204593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 696642 - 696675
Alignment:
Q  125 aataagctgaaaacagcttatgaacatgtaataa 158  Q
    ||||||||||||||||||||||||||||| ||||    
T  696642 aataagctgaaaacagcttatgaacatgtcataa 696675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 29274314 - 29274281
Alignment:
Q  71 tgttttcatataagctagaaactgttttcataag 104  Q
    ||||||||||||||||| ||||||||||||||||    
T  29274314 tgttttcatataagctataaactgttttcataag 29274281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 158
Target Start/End: Complemental strand, 8035233 - 8035145
Alignment:
Q  71 tgttttcatataagctagaaactgttttcataagctctccta-aaatattacagaaataagctgaaaacagcttatgaacatgtaataa 158  Q
    ||||||||||||||||||||  |||||||||||| | ||||| |||  ||||  ||||||| ||||||||  |||||| ||||| ||||    
T  8035233 tgttttcatataagctagaagttgttttcataagttatcctagaaagcttacgaaaataagttgaaaacaagttatgaccatgtcataa 8035145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 32821806 - 32821882
Alignment:
Q  83 agctagaaactgttttcataagctctcctaaa-atattacagaaataagctgaaaacagcttatgaacatgtaataa 158  Q
    ||||| |||||||||||||||||| ||||||| |  ||| |||||||| |||||||||||||||| |||||| ||||    
T  32821806 agctataaactgttttcataagctatcctaaagagcttatagaaataaactgaaaacagcttatggacatgtcataa 32821882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 9556224 - 9556265
Alignment:
Q  71 tgttttcatataagctagaaactgttttcataagctctccta 112  Q
    |||||||||| |||||| |||||||||||||||||| |||||    
T  9556224 tgttttcatacaagctataaactgttttcataagctatccta 9556265  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 30257720 - 30257757
Alignment:
Q  122 agaaataagctgaaaacagcttatgaacatgtaataaa 159  Q
    |||||||||||||||||||||||||||||||| |||||    
T  30257720 agaaataagctgaaaacagcttatgaacatgtcataaa 30257757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 4481969 - 4482003
Alignment:
Q  124 aaataagctgaaaacagcttatgaacatgtaataa 158  Q
    ||||||||| |||||||||||||||||||||||||    
T  4481969 aaataagctaaaaacagcttatgaacatgtaataa 4482003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 6292532 - 6292566
Alignment:
Q  124 aaataagctgaaaacagcttatgaacatgtaataa 158  Q
    |||||||||||||||||||||||||||||| ||||    
T  6292532 aaataagctgaaaacagcttatgaacatgtcataa 6292566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 37593715 - 37593681
Alignment:
Q  124 aaataagctgaaaacagcttatgaacatgtaataa 158  Q
    |||||||||||||||||||||||||||||| ||||    
T  37593715 aaataagctgaaaacagcttatgaacatgtcataa 37593681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 50318930 - 50318852
Alignment:
Q  76 tcatataagctagaaactgttttcataagctctcctaaa-atattacagaaataagctgaaaacagcttatgaacatgt 153  Q
    |||||||||||| |||||||| ||||||| | ||||||| |  ||| |||||||| ||| |||||| ||||||||||||    
T  50318930 tcatataagctataaactgttctcataagttatcctaaagaggttaaagaaataaactggaaacagtttatgaacatgt 50318852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Complemental strand, 31517771 - 31517742
Alignment:
Q  124 aaataagctgaaaacagcttatgaacatgt 153  Q
    ||||||||||||||||||||||||||||||    
T  31517771 aaataagctgaaaacagcttatgaacatgt 31517742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 48830159 - 48830126
Alignment:
Q  73 ttttcatataagctagaaactgttttcataagct 106  Q
    ||||||||||||||| ||||||||||||||||||    
T  48830159 ttttcatataagctataaactgttttcataagct 48830126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 4699648 - 4699612
Alignment:
Q  122 agaaataagctgaaaacagcttatgaacatgtaataa 158  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  4699648 agaaataagctaaaaacagcttatgaacatgtcataa 4699612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 24460444 - 24460404
Alignment:
Q  118 ttacagaaataagctgaaaacagcttatgaacatgtaataa 158  Q
    ||||| |||||||||| ||||||||||||||||||| ||||    
T  24460444 ttacaaaaataagctggaaacagcttatgaacatgtcataa 24460404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 36598388 - 36598353
Alignment:
Q  123 gaaataagctgaaaacagcttatgaacatgtaataa 158  Q
    ||||||||||||||||||||||||||||||| ||||    
T  36598388 gaaataagctgaaaacagcttatgaacatgtcataa 36598353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 11048067 - 11048100
Alignment:
Q  125 aataagctgaaaacagcttatgaacatgtaataa 158  Q
    ||||||||||||||||||||||||||||| ||||    
T  11048067 aataagctgaaaacagcttatgaacatgtcataa 11048100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 21453279 - 21453320
Alignment:
Q  71 tgttttcatataagctagaaactgttttcataagctctccta 112  Q
    |||| |||||||||||| |||||||||||||||||| |||||    
T  21453279 tgttctcatataagctataaactgttttcataagctatccta 21453320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 26333308 - 26333341
Alignment:
Q  127 taagctgaaaacagcttatgaacatgtaataaac 160  Q
    ||||||||||||||||||||||||||| ||||||    
T  26333308 taagctgaaaacagcttatgaacatgtcataaac 26333341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 43219674 - 43219641
Alignment:
Q  125 aataagctgaaaacagcttatgaacatgtaataa 158  Q
    ||||||||||||||||||||||||||||| ||||    
T  43219674 aataagctgaaaacagcttatgaacatgtcataa 43219641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 9423626 - 9423590
Alignment:
Q  123 gaaataagctgaaaacagcttatgaacatgtaataaa 159  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  9423626 gaaataagctgaaaacaacttatgaacatgtcataaa 9423590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 25130120 - 25130084
Alignment:
Q  124 aaataagctgaaaacagcttatgaacatgtaataaac 160  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  25130120 aaatatgctgaaaacagcttatgaacatgtcataaac 25130084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 9668 - 9634
Alignment:
Q  124 aaataagctgaaaacagcttatgaacatgtaataa 158  Q
    ||||||||| |||||||||||||||||||||||||    
T  9668 aaataagctaaaaacagcttatgaacatgtaataa 9634  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 17258914 - 17258880
Alignment:
Q  124 aaataagctgaaaacagcttatgaacatgtaataa 158  Q
    |||||||||||||||||||||||||||||| ||||    
T  17258914 aaataagctgaaaacagcttatgaacatgtcataa 17258880  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 152
Target Start/End: Original strand, 11615539 - 11615568
Alignment:
Q  123 gaaataagctgaaaacagcttatgaacatg 152  Q
    ||||||||||||||||||||||||||||||    
T  11615539 gaaataagctgaaaacagcttatgaacatg 11615568  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 4855731 - 4855771
Alignment:
Q  118 ttacagaaataagctgaaaacagcttatgaacatgtaataa 158  Q
    |||||||||||||| ||||||||||| ||||||||| ||||    
T  4855731 ttacagaaataagccgaaaacagcttctgaacatgtcataa 4855771  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 151
Target Start/End: Original strand, 12521566 - 12521594
Alignment:
Q  123 gaaataagctgaaaacagcttatgaacat 151  Q
    |||||||||||||||||||||||||||||    
T  12521566 gaaataagctgaaaacagcttatgaacat 12521594  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 12595749 - 12595713
Alignment:
Q  122 agaaataagctgaaaacagcttatgaacatgtaataa 158  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  12595749 agaaataagctgaaaacggcttatgaacatgcaataa 12595713  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 28413316 - 28413288
Alignment:
Q  123 gaaataagctgaaaacagcttatgaacat 151  Q
    |||||||||||||||||||||||||||||    
T  28413316 gaaataagctgaaaacagcttatgaacat 28413288  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 17223068 - 17223031
Alignment:
Q  123 gaaataagctgaaaacagcttatgaacatgtaataaac 160  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  17223068 gaaataagttgaaaacagcttatgaacatgtcataaac 17223031  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 45128390 - 45128313
Alignment:
Q  76 tcatataagctagaaactgttttcataagctctccta-aaatattacagaaataagctgaaaacagcttatgaacatg 152  Q
    |||||||||||| ||| ||||||||||| || ||||| |||  |||  |||||||||||||||||||| ||| |||||    
T  45128390 tcatataagctataaattgttttcataaactgtcctataaagcttatggaaataagctgaaaacagctcatggacatg 45128313  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 8469409 - 8469373
Alignment:
Q  123 gaaataagctgaaaacagcttatgaacatgtaataaa 159  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  8469409 gaaataagctgaaaacaacttatgaacatgtcataaa 8469373  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 20907332 - 20907372
Alignment:
Q  71 tgttttcatataagctagaaactgttttcataagctctcct 111  Q
    ||||||||||||||||| |||||||||||| ||||| ||||    
T  20907332 tgttttcatataagctataaactgttttcacaagctatcct 20907372  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 25571299 - 25571335
Alignment:
Q  124 aaataagctgaaaacagcttatgaacatgtaataaac 160  Q
    |||||||||||||||||||||||||||| | ||||||    
T  25571299 aaataagctgaaaacagcttatgaacatatcataaac 25571335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 48719422 - 48719386
Alignment:
Q  124 aaataagctgaaaacagcttatgaacatgtaataaac 160  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  48719422 aaataagctgaaaacagcttacgaacatgtcataaac 48719386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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