View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12492_low_25 (Length: 316)
Name: NF12492_low_25
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 146 - 300
Target Start/End: Complemental strand, 6822774 - 6822620
Alignment:
| Q |
146 |
aaagtctttcctctaattttccatacaaccagagggatgaaagcttctccaactttgacatattaatcgatataagtttatcaggatcaccagcttcatc |
245 |
Q |
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| T |
6822774 |
aaagtctttcctctaattttccatacaaccggagggatgaaagcttctccaactttgacatattaatcgatataagtttatcaggatcgccagcttcatc |
6822675 |
T |
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| Q |
246 |
cacggatttaagtgacagtgaatgaagctgttcaaggttcacaatcttctgtgct |
300 |
Q |
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| T |
6822674 |
cacggatttaagtgacaatgaatgaagctgttcaaggttcacaatcttctgtgct |
6822620 |
T |
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Target: chr8 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 7335191 - 7334916
Alignment:
| Q |
20 |
aagagtcagcatataaacacaacgacttaagcttgagcaggttctgcaactctggcataggatcaacggatagttctgaagctgacaaggtgagatgggt |
119 |
Q |
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| T |
7335191 |
aagagtcagcataaaaacacaatgacttaagctttttcaggttctgcaactgtggcatcggatcaactgatagctgtgaagctgtcaaggtgagttcagt |
7335092 |
T |
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| Q |
120 |
gagatttttcggaaggaggctcatataaagtctttcctctaattttccatacaaccagagggatgaaagcttctccaactttgacatattaatcgatata |
219 |
Q |
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| T |
7335091 |
gagatttataggaaggaggcttgtacgaattttgtcttctaatttgccaaacaaacggagggacgagagattatccagctttgacatattaatccattta |
7334992 |
T |
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| Q |
220 |
agtttatcaggatcaccagcttcatccacggatttaagtgacagtgaatgaagctgttcaaggttcacaatcttct |
295 |
Q |
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| T |
7334991 |
agttttttaggatcaccagtttcatccactgatttgagtgtcagtgaatgaagttgttcaagcttcacaatcttct |
7334916 |
T |
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