View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12492_low_26 (Length: 315)
Name: NF12492_low_26
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 32989503 - 32989222
Alignment:
| Q |
19 |
aagggaggttgcattggatccttcccgtgatatcattcttgcatatatgcaaaacggtgacgttttaacaccagatcatggttttcctgttagaattata |
118 |
Q |
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| T |
32989503 |
aagggaggttgcattggatccttcccgtgatatcattcttgcatatatgcaaaacggtgacgttttaacaccagatcatggttttcctgttagaattata |
32989404 |
T |
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| Q |
119 |
atacctggtttcattggaggaagaatggtgaaatggttgaagcgtattattgttacttctaaacaatctgataattattatcactacaatgataatagag |
218 |
Q |
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| T |
32989403 |
atacctggtttcattggaggaagaatggtgaaatggttgaagcgtattattgttacttctaaacaatctgataattattatcactacaatgataatagag |
32989304 |
T |
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| Q |
219 |
tacttccttcacatgttgatgctgagcttgccaatgctgaaggtaatttattttggttcgaaccggacctactaggtatcaa |
300 |
Q |
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| T |
32989303 |
tacttccttcacatgttgatgctgagcttgccaatgctgaaggtaatttattttggttcgaaccggacctactaggtatcaa |
32989222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 47 - 253
Target Start/End: Complemental strand, 32961812 - 32961606
Alignment:
| Q |
47 |
gatatcattcttgcatatatgcaaaacggtgacgttttaacaccagatcatggttttcctgttagaattataatacctggtttcattggaggaagaatgg |
146 |
Q |
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| T |
32961812 |
gatatcattttggcgtatatgcaaaatggtgaggttttagctcctgatcacggttttcctgtacgggttatcgttcctggtttcactgccggaagaatgg |
32961713 |
T |
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| Q |
147 |
tgaaatggttgaagcgtattattgttacttctaaacaatctgataattattatcactacaatgataatagagtacttccttcacatgttgatgctgagct |
246 |
Q |
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| T |
32961712 |
tgaaatggttgaagcgaatcattgtaacaaccaaagaatctgatagccattatcattaccatgataacagagtacttccctcgcaagttgatgctgagct |
32961613 |
T |
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| Q |
247 |
tgccaat |
253 |
Q |
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| T |
32961612 |
tgccaat |
32961606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 240
Target Start/End: Complemental strand, 24865646 - 24865439
Alignment:
| Q |
33 |
tggatccttcccgtgatatcattcttgcatatatgcaaaacggtgacgttttaacaccagatcatggttttcctgttagaattataatacctggtttcat |
132 |
Q |
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| T |
24865646 |
tggatccttctcgtgatgttattcttgcttacatgcagaatggcgaggctttggctccggatcatgggtttccggtgagggttattataccgggttttat |
24865547 |
T |
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| Q |
133 |
tggaggaagaatggtgaaatggttgaagcgtattattgttacttctaaacaatctgataattattatcactacaatgataatagagtacttccttcacat |
232 |
Q |
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| T |
24865546 |
cggtggaaggatggtgaaatggcttaagaggattgttgttactactgatgaatgtgatggtcattatcattataaggataatagagttcttccttctcat |
24865447 |
T |
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| Q |
233 |
gttgatgc |
240 |
Q |
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|||||||| |
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| T |
24865446 |
gttgatgc |
24865439 |
T |
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