View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12492_low_27 (Length: 314)
Name: NF12492_low_27
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 298
Target Start/End: Original strand, 41358882 - 41359161
Alignment:
| Q |
11 |
aacctgtgtgtctaaatcagatgaagaatttgtagaaggagaat---cactgagcaaggtgttaaatgacattgatccagagttgttccaattactaaca |
107 |
Q |
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| T |
41358882 |
aacctgtgtgtctaaatcagatgaagaatttgtagaagaagaagaaccactaagcaaggtgttaaatgacattgatccagagttgttcccattactaaca |
41358981 |
T |
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| Q |
108 |
atctccatccttgcatgcagtggctgtaaacccagtggccacccctcattctaacatcaaatccattgtat--nnnnnnnnncatgaatacaatgaaaat |
205 |
Q |
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| T |
41358982 |
atctccatccttgcatgcagtggctgtaaacccagtggccacccctcattctaacatcaaatccattgtataaaaaaaaaaacatgaatacaat------ |
41359075 |
T |
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| Q |
206 |
tcatgaggaaaattccaaaaactaacatatgaatataatagtcaaaagagtacctgttgagccatgttcttctctgtgatcttaatactattt |
298 |
Q |
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| T |
41359076 |
-------gaaaattccaaaaactaatatatgaatataatagtcaaaagagtacctgttgagccatgttcttctctgtgatcttaatactattt |
41359161 |
T |
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