View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12492_low_3 (Length: 654)
Name: NF12492_low_3
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 18 - 639
Target Start/End: Complemental strand, 28707678 - 28707054
Alignment:
| Q |
18 |
tgatcagtagattttggtgggggagtgaacaaggtgatcagaaaattcattgggtttcatggaattccctatatatgtagtgataaaaatgaaggcggaa |
117 |
Q |
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| T |
28707678 |
tgatccgtagattttggtgggggagtgaacaaggtgatcagaaaattcattgggtttcatggaattccctatatatgtagtgataaaaatgaaggcggaa |
28707579 |
T |
|
| Q |
118 |
tgggatttagaaccatgaaggagtttaacttagctatgttagcaaagaaaaaatggcatattattcggaatgaaggaagtttttgctcggttgctgcttg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| |
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| T |
28707578 |
tgggatttagaaccatgaaggagtttaacttagctatgttagcaaagaaaaaatggcatattattcggaatgaagaaagtttttgctcggtagttgcttg |
28707479 |
T |
|
| Q |
218 |
aaaaggcaataatttccaagaacgatcttcctagatgcaactcatggatataatccaagttacacttggaggagtgttctacaagctcgaatagaggtta |
317 |
Q |
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| T |
28707478 |
aaaaggcaataatttccaagaacgatcttcctaaatgcaactcatggatataatccaagttacacttggaggagtgttctacaagctcgaatagaggtta |
28707379 |
T |
|
| Q |
318 |
tcgatcatgctggtctttggttggtgacggtaaaagtattaaaatttggggtgataattggttaccatatcaacaaggtcatagaatttggtccccttaa |
417 |
Q |
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| T |
28707378 |
tcgatcatgctggtctttggttggtgacggtaaaagtattaaaatttggggtgataattggttaccatatcaacaaggtcatagaatttggtccccttaa |
28707279 |
T |
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| Q |
418 |
cctccaaattatgttctgtgaaatgtggcagacctaatacatccag---atcagaaagaatggaattctcaattgattaatgctaccttccttgctttta |
514 |
Q |
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| T |
28707278 |
cctccaaattatgttctgtgaaatgtggcagacctaatacatccagatcatcagaaagaatggaattctcaattgattaatgctaccttccttgctttta |
28707179 |
T |
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| Q |
515 |
aggctcaacaaatcctttaaatccctctttccctaaataatccgcaagatcgcttcatatggggagagaataacgaatgtgaattttctgttaagtctgc |
614 |
Q |
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| T |
28707178 |
aggctcaacaaatcctttaaatccctctttccctaaataatccgcaagatcgcttcatatggggagagaataacgaatgtgaattttctgttaagtctgc |
28707079 |
T |
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| Q |
615 |
ttacaaattccaaaaacgaagaaat |
639 |
Q |
| |
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| T |
28707078 |
ttacaaattccaaaaacgaagaaat |
28707054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 7e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 102 - 486
Target Start/End: Complemental strand, 24704619 - 24704233
Alignment:
| Q |
102 |
aaaaatgaaggcggaatgggatttagaaccatgaaggagttt-aacttagctatgttagcaaagaaaaaatggcatattattcggaatgaaggaagtttt |
200 |
Q |
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||||||||||| || | |||||| | |||||||||||||||| |||||||||||||| |||| | || ||||| |||||||| |||||||| |||||| |
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| T |
24704619 |
aaaaatgaaggtgggacgggattcaaaaccatgaaggagttttaacttagctatgttggcaaggcaaggatggcgtattattcagaatgaagaaagtttg |
24704520 |
T |
|
| Q |
201 |
tgctcggttgctgcttgaaaaggcaataatttccaagaacgatcttcctagatgcaactcatggatataatccaagttacacttggaggagtgttctaca |
300 |
Q |
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| T |
24704519 |
t--tcggtagttgcttgaaaaggcgatactttccaagaaccaacttcctcaatgcaactcttggatataatccaagttacacttggaggagtattcttca |
24704422 |
T |
|
| Q |
301 |
agctcgaatagaggttatcgatcatgctggtctttg----gttggtgacggtaaaagtattaaaatttggggtgataattggttaccatatcaacaaggt |
396 |
Q |
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|| |||||| |||||||||||||||| ||||||||| |||||||| |||||||||| |||||||||||||||||| |||||||||||||| |||||| |
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| T |
24704421 |
agatcgaatggaggttatcgatcatgttggtctttggagagttggtgatggtaaaagtactaaaatttggggtgataactggttaccatatcagcaaggt |
24704322 |
T |
|
| Q |
397 |
catagaatttggtccccttaacctccaaattatgttctgtgaaatgtggcagacctaatacatccagatcagaaagaatggaattctcaa |
486 |
Q |
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| |||||||||||| ||| |||||||||||| | |||| | ||| |||||| | ||||||||| |||||| |||||||| |||||||||| |
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| T |
24704321 |
cgtagaatttggtctcctcaacctccaaattgtattctttcaaaagtggca-aactaatacattcagatcggaaagaatagaattctcaa |
24704233 |
T |
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