View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12492_low_31 (Length: 275)
Name: NF12492_low_31
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 29144892 - 29145140
Alignment:
| Q |
20 |
gttattagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatatt |
119 |
Q |
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| T |
29144892 |
gttattagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatatt |
29144991 |
T |
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| Q |
120 |
gttgctgctatttgtgttgctccctttgcactctattttgaaaggtatttcattttcaattctatattttatttgcaaattatttcattaatctacc--- |
216 |
Q |
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| T |
29144992 |
gttgctgctatttgtgttgctccttttgcactctattttgaaaggtaattcattttcaattctatattttatttgcaaattgtttcattaatctacctag |
29145091 |
T |
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| Q |
217 |
taagtatggtgctctttcccatgcacttcacttccctttttgttctgtg |
265 |
Q |
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| T |
29145092 |
tatatatagtactctttcccatgcacttcacttccctttttgttctgtg |
29145140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 29227081 - 29226833
Alignment:
| Q |
20 |
gttattagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatatt |
119 |
Q |
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| T |
29227081 |
gttattagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatatt |
29226982 |
T |
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| Q |
120 |
gttgctgctatttgtgttgctccctttgcactctattttgaaaggtatttcattttcaattctatattttatttgcaaattatttcattaatctacc--- |
216 |
Q |
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| T |
29226981 |
gttgctgctatttgtgttgctccttttgcactctattttgaaaggtaattcattttcaattctatattttatttgcaaattgttgcattaatctacctag |
29226882 |
T |
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| Q |
217 |
taagtatggtgctctttcccatgcacttcacttccctttttgttctgtg |
265 |
Q |
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| T |
29226881 |
tatatatagtactctttcccatgcactttacttccctttttgttctgtg |
29226833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 5306954 - 5306809
Alignment:
| Q |
20 |
gttattagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatatt |
119 |
Q |
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|||||||||||||||||||| ||||||||| |||||| ||||||| ||||| |||||||| || |||| |||||||||||||| ||| |||||||| ||| |
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| T |
5306954 |
gttattagtgcaaatatttggaactgggatacaacttttatcaagggtcatcttggttcagggcactttcatttttgcactcaatgcatatcgacaaatt |
5306855 |
T |
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| Q |
120 |
gttgctgctatttgtgttgctccctttgcactctattttgaaaggt |
165 |
Q |
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| T |
5306854 |
gttgctgctgtttgtgtcgccccctttgcactttattttgaaaggt |
5306809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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