View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12492_low_32 (Length: 261)
Name: NF12492_low_32
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 314142 - 314362
Alignment:
| Q |
18 |
agacgcatgttttgaactttgtatttgataaaagactccttcctttcctcattctgaaaatatttggatcctttgctcatttcataaacaatcctttgta |
117 |
Q |
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| T |
314142 |
agacgcatgttttgaactttgtatttgataaaagactccttcctttcctcattctgaaaatatttggatcctttgctcatttcataaacaatcctttgta |
314241 |
T |
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| Q |
118 |
ctttttctttgtcaacaccttccattcctgctttcgcgctagtgtaaacggtgttgtaagactgccatcgattatcatcgcttccctccatcgacatctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
314242 |
ctttttctttgtcaacaccttccattcctgctttcgcgctagtgtaaacggtgttgtaagactgccatcgattatcatcgcttccctccatcgacatctt |
314341 |
T |
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| Q |
218 |
ctccttcacttgttgccgcgt |
238 |
Q |
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||| ||||||||||||||||| |
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| T |
314342 |
ctctttcacttgttgccgcgt |
314362 |
T |
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