View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12492_low_33 (Length: 251)
Name: NF12492_low_33
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 41141716 - 41141472
Alignment:
| Q |
1 |
ttcattatgcagatgttgtgacttactatttgctttttcatgtttagtacattaattttctgtgtatagataaaattcttctgttgttt-----ccaact |
95 |
Q |
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| T |
41141716 |
ttcattatgcagatgttgtgacttactatttgctttttcatgtttagtgtattaattttctgtgtatagataaaattcttctgttgtttggtttccaact |
41141617 |
T |
|
| Q |
96 |
catatggtgtaaaatgaaactatatttgcaggttactactgcagatccaattgtgaacaaatatatagccatgggactcagccgagacgtagttcctatt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41141616 |
catatggtgtaaaatgaaactatatttgcaggttactactgcagatccaattgtgaacaaatatatagccatgggactcagccgagacgtagttcctatt |
41141517 |
T |
|
| Q |
196 |
gctgttaagaattatggtgataatcctaccaaagtatgttctctg |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41141516 |
gctgttaagaattatggtgataatcctaccaaagtatgttctctg |
41141472 |
T |
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