View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12492_low_34 (Length: 241)
Name: NF12492_low_34
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8946796 - 8947016
Alignment:
| Q |
1 |
tagctattccccttgccgttccatttgcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatt |
100 |
Q |
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| T |
8946796 |
tagctattccccttgccgttccatttgcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatt |
8946895 |
T |
|
| Q |
101 |
tgtgtcacgtgtagtgttcactattgttgtattaatgttcgaatttttcgcagataaccctttattgaagaatctagctccaatgagtttcttgttgcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8946896 |
tgtgtcacgtgtagtgttcactattgttgtattaatgttcgaatttttcgcagataaccctttattgaagaatcttgctccaatgagtttcttgttgcaa |
8946995 |
T |
|
| Q |
201 |
aatgatgaattgttggtattt |
221 |
Q |
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||||||||||||||| ||||| |
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| T |
8946996 |
aatgatgaattgttgctattt |
8947016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 8962295 - 8962077
Alignment:
| Q |
3 |
gctattccccttgccgttccatttgcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttg |
102 |
Q |
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|||||||| ||||| ||||||||||||||||| ||||| |||||||||| ||| ||||| || ||| | |||||||||||||||||||||||||||| || |
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| T |
8962295 |
gctattcctcttgctgttccatttgcataaccgaagaatgatgcaccattaacctgattccccgctaccgttgttgaagtgtgggttccatgaccatctg |
8962196 |
T |
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| Q |
103 |
tgtcacgtgtagtgttcactattgttgtattaatgttcgaatttttcgcagataaccctttattgaagaatctagctccaatgagtttcttgttgcaaaa |
202 |
Q |
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| T |
8962195 |
tgtcacgtgtagagttcactgttgttgtatcaatggtggaattcatcgccaagaaccctttgttgaagaatcttgctccaatgagttttttgttgcaaaa |
8962096 |
T |
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| Q |
203 |
tgatgaattgttggtattt |
221 |
Q |
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|||||||||||||||||| |
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| T |
8962095 |
agatgaattgttggtattt |
8962077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 8973699 - 8973479
Alignment:
| Q |
1 |
tagctattccccttgccgttccatttgcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatt |
100 |
Q |
| |
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|||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| || ||||||||||| |
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| T |
8973699 |
tagctattcctcttgctgttccgtttgcataaccaaagaatgatgcaccatcaacttgattcccagctgctgttgttgaagtgtgtgtcccatgaccatt |
8973600 |
T |
|
| Q |
101 |
tgtgtcacgtgtagtgttcactattgttgtattaatgttcgaatttttcgcagataaccctttattgaagaatctagctccaatgagtttcttgttgcaa |
200 |
Q |
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| T |
8973599 |
tgtgtcacgtgtggagttcaaaattgtgttagttagatttggatattttgccaaaaaccctttgttgaagaatctagctccaatgagtttcttgttgcaa |
8973500 |
T |
|
| Q |
201 |
aatgatgaattgttggtattt |
221 |
Q |
| |
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|| |||||||||||||||||| |
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| T |
8973499 |
aaagatgaattgttggtattt |
8973479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 9950125 - 9950244
Alignment:
| Q |
18 |
gttccatttgcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgt |
117 |
Q |
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|||| |||| |||||||||||||| ||||||||||||||||||||| | || |||| |||||||||||| | | | ||| ||| | || |||||| | |
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| T |
9950125 |
gttcgatttacataaccaaagaaaaatgcaccatcaacttgatttcaagttgttgttaatgaagtgtgggtctcttaatcatatgtatgacatgtagtat |
9950224 |
T |
|
| Q |
118 |
tcactattgttgtattaatg |
137 |
Q |
| |
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|||| ||||||||||||||| |
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| T |
9950225 |
tcacaattgttgtattaatg |
9950244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 8957140 - 8957087
Alignment:
| Q |
159 |
cctttattgaagaatctagctccaatgagtttcttgttgcaaaatgatgaattg |
212 |
Q |
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||||| ||||||||| | || |||||||||||||||||||||| ||||||||| |
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| T |
8957140 |
cctttgttgaagaatttggcaccaatgagtttcttgttgcaaagagatgaattg |
8957087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 8957270 - 8957197
Alignment:
| Q |
26 |
tgcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccat |
99 |
Q |
| |
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| T |
8957270 |
tgcataaccaaaaaatgaagcatcatcaactctgtttccagctgctgttgatgaagtgtgagtcccatgaccat |
8957197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 21687936 - 21688146
Alignment:
| Q |
2 |
agctattccccttgccgttccatttgcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccattt |
101 |
Q |
| |
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|||||| || ||||| |||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||| || || || ||||| ||| |
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| T |
21687936 |
agctatacctcttgctgttccatttgcatagccaaagaaagatgcaccatcaactttgcttccagctgctgttgttgaagtatgtgtcccgtgaccgttt |
21688035 |
T |
|
| Q |
102 |
gtgtcacgtgtagtgttcactattgttgtattaatgttcgaatttttcgcagataaccctttattgaagaatctagctccaatgagtttcttgttgcaaa |
201 |
Q |
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||||||||||| | ||||| ||||||||| ||||||| || | ||| || | || ||||| |||||||| |||||||||||||||||||||||||| | |
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| T |
21688036 |
gtgtcacgtgtggagttcaaaattgttgtactaatgttggagtgttttgccaagaagcctttgttgaagaacctagctccaatgagtttcttgttgcaca |
21688135 |
T |
|
| Q |
202 |
atgatgaattg |
212 |
Q |
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| ||| ||||| |
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| T |
21688136 |
aagataaattg |
21688146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 34963707 - 34963754
Alignment:
| Q |
165 |
ttgaagaatctagctccaatgagtttcttgttgcaaaatgatgaattg |
212 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
34963707 |
ttgaagaatttagctccaatgagtttcttgttgcaaagagatgaattg |
34963754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 34963572 - 34963657
Alignment:
| Q |
27 |
gcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgt |
112 |
Q |
| |
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|||||||||||||| |||||| |||||| |||| ||||||||||||||||| || ||||||||||| | |||||||||||| |
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| T |
34963572 |
gcataaccaaagaatgatgcatggtcaactctgcttccagctgctgttgttgaagtatgagttccatgaccttctgtgtcacgtgt |
34963657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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