View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12492_low_35 (Length: 237)

Name: NF12492_low_35
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12492_low_35
NF12492_low_35
[»] chr3 (20 HSPs)
chr3 (19-220)||(2806760-2806961)
chr3 (19-202)||(2748515-2748698)
chr3 (19-220)||(2768568-2768769)
chr3 (19-220)||(2789857-2790058)
chr3 (19-220)||(2839038-2839239)
chr3 (19-220)||(2856248-2856449)
chr3 (33-190)||(2818086-2818243)
chr3 (19-220)||(2796860-2797061)
chr3 (33-177)||(2758756-2758900)
chr3 (33-220)||(5412408-5412593)
chr3 (76-148)||(22104265-22104337)
chr3 (70-149)||(22621766-22621845)
chr3 (76-172)||(21936671-21936767)
chr3 (76-148)||(30990130-30990202)
chr3 (76-133)||(21945190-21945247)
chr3 (76-133)||(22178974-22179031)
chr3 (70-161)||(3280736-3280827)
chr3 (90-140)||(3200526-3200576)
chr3 (93-139)||(3311133-3311179)
chr3 (93-139)||(3322732-3322778)
[»] scaffold0691 (1 HSPs)
scaffold0691 (33-220)||(6604-6791)
[»] chr1 (3 HSPs)
chr1 (64-166)||(34975035-34975137)
chr1 (64-180)||(34979679-34979795)
chr1 (64-181)||(34988735-34988852)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 2806961 - 2806760
Alignment:
Q  19 atgcttcgcgcagctgctttacccaagttctaattccatcgtttgtgtctacttcatctgctgctcttctatctgcatctttgaggaagacttgaatgct 118  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2806961 atgcttcgcgcagctgctttacccaagttctaattccatcatttgtgtctgcttcatctgctgctcttctatctgcatctttgaggaagacttgaatgct 2806862  T
Q  119 ctcaagttcatctttgatgtctgaaaattctgcgtgtacacctttcagaagatttgtttcttcttttaggaatcggaacacttcatcaagggcaaataat 218  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2806861 ctcaagttcatctttgatgtctgaaaattctgtgtgtacaccttttagaagatttgtttcttcttttaggaatcggaacacttcatcaagggcaaataat 2806762  T
Q  219 ac 220  Q
    ||    
T  2806761 ac 2806760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 2748698 - 2748515
Alignment:
Q  19 atgcttcgcgcagctgctttacccaagttctaattccatcgtttgtgtctacttcatctgctgctcttctatctgcatctttgaggaagacttgaatgct 118  Q
    ||||||| | ||||||||| ||||||||||| ||||||||||| |||||| ||||||| || || ||||| |||||||||||||||||||||||||||||    
T  2748698 atgcttctctcagctgcttcacccaagttcttattccatcgttagtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgct 2748599  T
Q  119 ctcaagttcatctttgatgtctgaaaattctgcgtgtacacctttcagaagatttgtttcttcttttaggaatcggaacacttc 202  Q
    ||||||||||||||||||||||||||| |||  |||||||| | ||||||||||||||||||||||||||||  ||||||||||    
T  2748598 ctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaagatttgtttcttcttttaggaactggaacacttc 2748515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 2768769 - 2768568
Alignment:
Q  19 atgcttcgcgcagctgctttacccaagttctaattccatcgtttgtgtctacttcatctgctgctcttctatctgcatctttgaggaagacttgaatgct 118  Q
    ||||||| | ||||||||| ||||||||||| ||||||||||| |||||| ||||||| || || ||||| |||||||||||||||||||||||||||||    
T  2768769 atgcttctctcagctgcttcacccaagttcttattccatcgttggtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgct 2768670  T
Q  119 ctcaagttcatctttgatgtctgaaaattctgcgtgtacacctttcagaagatttgtttcttcttttaggaatcggaacacttcatcaagggcaaataat 218  Q
    ||||||||||||||||||||||||||| |||  |||||||||  |||| |||||||||||||||||||||||| |||| ||||   |||| |||||||||    
T  2768669 ctcaagttcatctttgatgtctgaaaaatctctgtgtacaccactcagcagatttgtttcttcttttaggaattggaaaacttgcccaagagcaaataat 2768570  T
Q  219 ac 220  Q
    ||    
T  2768569 ac 2768568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 2790058 - 2789857
Alignment:
Q  19 atgcttcgcgcagctgctttacccaagttctaattccatcgtttgtgtctacttcatctgctgctcttctatctgcatctttgaggaagacttgaatgct 118  Q
    ||||||| | ||||||||| ||||||||||| |||||||| || |||||| |||||||||| |||||| |||||||||||||||||||||||||||||||    
T  2790058 atgcttctctcagctgcttcacccaagttcttattccatcattggtgtctgcttcatctgcagctcttatatctgcatctttgaggaagacttgaatgct 2789959  T
Q  119 ctcaagttcatctttgatgtctgaaaattctgcgtgtacacctttcagaagatttgtttcttcttttaggaatcggaacacttcatcaagggcaaataat 218  Q
    |||||||||||||||||||||| |||| |||  ||| |||||  |||| ||||||||||||||||||||||||   ||||||||  | ||| ||||||||    
T  2789958 ctcaagttcatctttgatgtctaaaaaatctttgtgcacaccactcaggagatttgtttcttcttttaggaattccaacacttcccccaggacaaataat 2789859  T
Q  219 ac 220  Q
    ||    
T  2789858 ac 2789857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 2839038 - 2839239
Alignment:
Q  19 atgcttcgcgcagctgctttacccaagttctaattccatcgtttgtgtctacttcatctgctgctcttctatctgcatctttgaggaagacttgaatgct 118  Q
    ||||||| | ||||||||| ||||||||||| |||||||||||  ||||| ||||||| || || ||||| ||||||||||||||||||||| ||||| |    
T  2839038 atgcttctctcagctgcttcacccaagttcttattccatcgttgatgtctgcttcatccgcagcccttctgtctgcatctttgaggaagactagaatgat 2839137  T
Q  119 ctcaagttcatctttgatgtctgaaaattctgcgtgtacacctttcagaagatttgtttcttcttttaggaatcggaacacttcatcaagggcaaataat 218  Q
    |||||||||||||||||| |||||||| |||  |||||||||| |||||||||||||||||||||||||||||  |||||||||  | |||||||| |||    
T  2839138 ctcaagttcatctttgatatctgaaaaatctctgtgtacacctctcagaagatttgtttcttcttttaggaatttgaacacttcccctagggcaaacaat 2839237  T
Q  219 ac 220  Q
    ||    
T  2839238 ac 2839239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 2856248 - 2856449
Alignment:
Q  19 atgcttcgcgcagctgctttacccaagttctaattccatcgtttgtgtctacttcatctgctgctcttctatctgcatctttgaggaagacttgaatgct 118  Q
    ||||||| | ||||||||| ||||||||||| |||||||| ||  ||||| ||||||| || || ||| | |||||||||||||||||||||||||||||    
T  2856248 atgcttctctcagctgcttcacccaagttcttattccatcattgatgtctgcttcatccgcagcccttatgtctgcatctttgaggaagacttgaatgct 2856347  T
Q  119 ctcaagttcatctttgatgtctgaaaattctgcgtgtacacctttcagaagatttgtttcttcttttaggaatcggaacacttcatcaagggcaaataat 218  Q
    ||||||||||||||||||||||||||| |||  |||||||||| ||| ||||||||||||||||||||||||  ||||||||||  | |||||||| |||    
T  2856348 ctcaagttcatctttgatgtctgaaaaatctctgtgtacacctctcaaaagatttgtttcttcttttaggaactggaacacttcccccagggcaaacaat 2856447  T
Q  219 ac 220  Q
    ||    
T  2856448 ac 2856449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 33 - 190
Target Start/End: Complemental strand, 2818243 - 2818086
Alignment:
Q  33 tgctttacccaagttctaattccatcgtttgtgtctacttcatctgctgctcttctatctgcatctttgaggaagacttgaatgctctcaagttcatctt 132  Q
    ||||| ||||| ||||| |||||||| || | |||  ||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||    
T  2818243 tgcttcacccatgttcttattccatcattggcgtccgcttcatctgctgcccttctatctgcatctttgaggaagacttggatgctttctagttcatctt 2818144  T
Q  133 tgatgtctgaaaattctgcgtgtacacctttcagaagatttgtttcttcttttaggaa 190  Q
    ||||||||||||| |||  |||||||||| ||||||| ||||||||||||||||||||    
T  2818143 tgatgtctgaaaaatctctgtgtacacctctcagaagctttgtttcttcttttaggaa 2818086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 2797061 - 2796860
Alignment:
Q  19 atgcttcgcgcagctgctttacccaagttctaattccatcgtttgtgtctacttcatctgctgctcttctatctgcatctttgaggaagacttgaatgct 118  Q
    ||||||| | ||| ||||| ||||||||||| |||||||| || |||||   ||||||||| |||||| ||||||||||||||||||| |||||||||||    
T  2797061 atgcttctctcagatgcttcacccaagttcttattccatcattggtgtcggtttcatctgcagctcttgtatctgcatctttgaggaaaacttgaatgct 2796962  T
Q  119 ctcaagttcatctttgatgtctgaaaattctgcgtgtacacctttcagaagatttgtttcttcttttaggaatcggaacacttcatcaagggcaaataat 218  Q
    ||||||||||||| ||||||||||||| |||  ||| ||||   |||| ||||||||||||||||||||||||   |||||||   | ||||||||||||    
T  2796961 ctcaagttcatctgtgatgtctgaaaaatctttgtgcacacgactcagcagatttgtttcttcttttaggaattcaaacactttccccagggcaaataat 2796862  T
Q  219 ac 220  Q
    ||    
T  2796861 ac 2796860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 177
Target Start/End: Complemental strand, 2758900 - 2758756
Alignment:
Q  33 tgctttacccaagttctaattccatcgtttgtgtctacttcatctgctgctcttctatctgcatctttgaggaagacttgaatgctctcaagttcatctt 132  Q
    ||||| ||||| ||||| ||||| || || || ||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  2758900 tgcttcacccatgttcttattccttcattggtttctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatctt 2758801  T
Q  133 tgatgtctgaaaattctgcgtgtacacctttcagaagatttgttt 177  Q
    |||||||| | || |||  |||||||||| | |||||||||||||    
T  2758800 tgatgtctaagaaatctttgtgtacacctcttagaagatttgttt 2758756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 220
Target Start/End: Complemental strand, 5412593 - 5412408
Alignment:
Q  33 tgctttacccaagttctaattccatcgtttgtgtctacttcatctgctgctcttctatctgcatctttgaggaagacttgaatgctctcaagttcatctt 132  Q
    ||||| ||||| ||||| |||||||| || | |||  |||||||||| || ||| | ||||||||||||||||||  ||||||| | || ||||||||||    
T  5412593 tgcttcacccatgttcttattccatcattggcgtccgcttcatctgcagcccttttgtctgcatctttgaggaaggattgaatgatttctagttcatctt 5412494  T
Q  133 tgatgtctgaaaattctgcgtgtacacctttcagaagatttgtttcttcttttaggaatcggaacacttcatcaagggcaaataatac 220  Q
    ||||||||||||| |||  ||||| |||||||||  ||||||||||||||| ||||||| |||||| ||   |||||||||| |||||    
T  5412493 tgatgtctgaaaaatct--gtgtatacctttcagccgatttgtttcttcttctaggaattggaacagtttcccaagggcaaacaatac 5412408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 22104337 - 22104265
Alignment:
Q  76 ctgctgctcttctatctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaattc 148  Q
    |||| ||||||||||| ||||||||||||||| |||| ||||| |||||||||||||| | ||||| ||||||    
T  22104337 ctgcagctcttctatcagcatctttgaggaaggcttggatgctttcaagttcatctttaaggtctgcaaattc 22104265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 22621766 - 22621845
Alignment:
Q  70 cttcatctgctgctcttctatctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaattct 149  Q
    ||||| |||| ||||||||||| ||||| || |||||| |||| ||||| |||||||||||||| ||||||| |||||||    
T  22621766 cttcacctgcagctcttctatcagcatccttaaggaaggcttggatgctttcaagttcatctttaatgtctgcaaattct 22621845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 21936767 - 21936671
Alignment:
Q  76 ctgctgctcttctatctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaattctgcgtgtacacctttcagaagatt 172  Q
    |||| ||||||||||| ||||| || |||||| |||| ||||| |||||||||||||| ||||||  ||||||   ||| |||||||| ||||||||    
T  21936767 ctgcagctcttctatcagcatccttaaggaaggcttggatgctttcaagttcatctttaatgtctccaaattccttgtgaacacctttgagaagatt 21936671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 30990130 - 30990202
Alignment:
Q  76 ctgctgctcttctatctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaattc 148  Q
    |||| |||||| |||| |||||||| || ||| |||||||||| |||||||||||||| || |||||||||||    
T  30990130 ctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctgaaaattc 30990202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 21945247 - 21945190
Alignment:
Q  76 ctgctgctcttctatctgcatctttgaggaagacttgaatgctctcaagttcatcttt 133  Q
    ||||||||||| |||| ||||| ||||||||  |||||||||| ||||||||||||||    
T  21945247 ctgctgctcttttatcagcatccttgaggaatgcttgaatgctttcaagttcatcttt 21945190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 22179031 - 22178974
Alignment:
Q  76 ctgctgctcttctatctgcatctttgaggaagacttgaatgctctcaagttcatcttt 133  Q
    |||| ||||||||||| ||||||||||||||| |||| ||||| |||| |||||||||    
T  22179031 ctgcagctcttctatcagcatctttgaggaaggcttggatgctttcaaattcatcttt 22178974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 3280736 - 3280827
Alignment:
Q  70 cttcatctgctgctcttctatctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaattctgcgtgtacacct 161  Q
    ||||||| || |||||| |||||||||| ||||| ||  |||  |||||||||||||||| |||||| ||| |||| ||| | |||||||||    
T  3280736 cttcatcagcagctcttgtatctgcatccttgagaaaagctttgatgctctcaagttcatgtttgatctcttaaaagtctccatgtacacct 3280827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 3200576 - 3200526
Alignment:
Q  90 tctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtct 140  Q
    |||||||| |||||  | |||||||||||||||||||||| ||||||||||    
T  3200576 tctgcatccttgagtgaaacttgaatgctctcaagttcatatttgatgtct 3200526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 3311133 - 3311179
Alignment:
Q  93 gcatctttgaggaagacttgaatgctctcaagttcatctttgatgtc 139  Q
    ||||| ||||||||| |||| ||||||||||| ||||||||||||||    
T  3311133 gcatccttgaggaaggcttggatgctctcaaggtcatctttgatgtc 3311179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 3322732 - 3322778
Alignment:
Q  93 gcatctttgaggaagacttgaatgctctcaagttcatctttgatgtc 139  Q
    ||||| ||||||||| |||| ||||||||||| ||||||||||||||    
T  3322732 gcatccttgaggaaggcttggatgctctcaaggtcatctttgatgtc 3322778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 33 - 220
Target Start/End: Original strand, 6604 - 6791
Alignment:
Q  33 tgctttacccaagttctaattccatcgtttgtgtctacttcatctgctgctcttctatctgcatctttgaggaagacttgaatgctctcaagttcatctt 132  Q
    ||||| ||||||||||| |||||||| || |||||| |||||||||| ||  |||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  6604 tgcttcacccaagttcttattccatcattagtgtctgcttcatctgcagcctttctgtctgcatctttgaggaagatttgaatgctttcaagttcatctt 6703  T
Q  133 tgatgtctgaaaattctgcgtgtacacctttcagaagatttgtttcttcttttaggaatcggaacacttcatcaagggcaaataatac 220  Q
    ||||||||| ||| |||| |||||||||| |||||||||||||||||| |||||||||| |||||| |||  | |||||||| |||||    
T  6704 tgatgtctgtaaaatctgtgtgtacacctctcagaagatttgtttctttttttaggaattggaacaattctccgagggcaaacaatac 6791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 34975137 - 34975035
Alignment:
Q  64 tgtctacttcatctgctgctcttctatctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaattctgcgtgtacaccttt 163  Q
    ||||| ||||| |||| ||||||||||| | ||||||||||||| |||||||||| || ||||||| ||| ||||||| |||||||  ||| ||||||||    
T  34975137 tgtctccttcagctgcagctcttctatcagaatctttgaggaaggcttgaatgctttcgagttcatatttaatgtctgcaaattctttgtgaacaccttt 34975038  T
Q  164 cag 166  Q
    |||    
T  34975037 cag 34975035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 34979795 - 34979679
Alignment:
Q  64 tgtctacttcatctgctgctcttctatctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaattctgcgtgtacaccttt 163  Q
    ||||| ||||| |||| ||||||||||| |||||||| |||||| ||| |||||| || ||||||| ||| ||||||| |||||||  ||| ||||||||    
T  34979795 tgtctccttcagctgcagctcttctatcagcatctttaaggaaggcttcaatgctttcgagttcatatttaatgtctgcaaattctttgtgaacaccttt 34979696  T
Q  164 cagaagatttgtttctt 180  Q
     || || || |||||||    
T  34979695 tagtagtttggtttctt 34979679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 34988852 - 34988735
Alignment:
Q  64 tgtctacttcatctgctgctcttctatctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaattctgcgtgtacaccttt 163  Q
    ||||| ||||| |||| ||||||||||| |||||||  ||||||  ||| ||||| || ||||||| ||| ||||||| |||||||  ||| ||||||||    
T  34988852 tgtctccttcagctgcagctcttctatcagcatcttcaaggaaggtttggatgctttccagttcatatttaatgtctgcaaattctttgtgaacaccttt 34988753  T
Q  164 cagaagatttgtttcttc 181  Q
    ||| || || ||||||||    
T  34988752 cagtagtttggtttcttc 34988735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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