View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12492_low_40 (Length: 217)
Name: NF12492_low_40
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 3564453 - 3564640
Alignment:
| Q |
19 |
agcaataactacaccaaa---gaagtgaatgacttgaatatcgaagtttgaatttgttagtgtgttatattttgtaaaacgtatggcacgttacatcnnn |
115 |
Q |
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| T |
3564453 |
agcaataactacaccaaatgagaagtgaatgacttgaatatcgaagtttgaatttgttagtgtgttatattttgtaaaacgcatggcatgttacatcttt |
3564552 |
T |
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| Q |
116 |
nnnncccctaagtttgtacatattaagtgaatgaaatgaatggttttaccgaaacaagggagagtgaaatgactgtgaatggtatcaa |
203 |
Q |
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| T |
3564553 |
ttttcccctaagtttgtacatattaagtgaatgaaatgaatggttttaccgaaacaagggagagtgaaatgactgtgaatggtatcaa |
3564640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 39 - 194
Target Start/End: Original strand, 3570127 - 3570286
Alignment:
| Q |
39 |
agtgaatgacttgaatatcgaagtttgaatttgttagtgtgttatattttgtaaaacgtatggcacgttacatcnnnnnnnc----ccctaagtttgtac |
134 |
Q |
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||||||||||||||||||| || ||||||||||||| |||||||||| ||| |||||||||||| | ||||||| | ||||||||||||| |
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| T |
3570127 |
agtgaatgacttgaatatcaaactttgaatttgttattgtgttatatgttgaaaaacgtatggcgcattacatctttttttcttcttcctaagtttgtac |
3570226 |
T |
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| Q |
135 |
atattaagtgaatgaaatgaatggttttaccgaaacaagggagagtgaaatgactgtgaa |
194 |
Q |
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| T |
3570227 |
aaattatgtgaatgaaatgaatggttttactaaaacaagggagagagcaatgaatgtgaa |
3570286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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