View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12492_low_6 (Length: 550)

Name: NF12492_low_6
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12492_low_6
NF12492_low_6
[»] chr6 (9 HSPs)
chr6 (1-245)||(3321832-3322077)
chr6 (397-533)||(3321484-3321620)
chr6 (239-319)||(3321699-3321779)
chr6 (5-50)||(3315196-3315241)
chr6 (239-312)||(15337519-15337591)
chr6 (479-522)||(3314568-3314611)
chr6 (254-321)||(31869754-31869820)
chr6 (252-321)||(3623860-3623927)
chr6 (282-312)||(14214072-14214102)
[»] chr5 (6 HSPs)
chr5 (239-321)||(18998718-18998799)
chr5 (237-310)||(35824991-35825063)
chr5 (254-321)||(32017259-32017325)
chr5 (236-318)||(13812075-13812156)
chr5 (236-308)||(4671237-4671308)
chr5 (265-313)||(17476933-17476981)
[»] chr3 (3 HSPs)
chr3 (239-310)||(3020362-3020430)
chr3 (239-311)||(23940522-23940593)
chr3 (254-321)||(43181505-43181572)
[»] chr1 (5 HSPs)
chr1 (254-321)||(30385295-30385361)
chr1 (282-321)||(7568636-7568675)
chr1 (249-312)||(44644514-44644576)
chr1 (403-447)||(15382445-15382489)
chr1 (249-321)||(44647863-44647934)
[»] chr4 (7 HSPs)
chr4 (255-312)||(19903809-19903865)
chr4 (248-318)||(5472104-5472173)
chr4 (237-321)||(2571032-2571115)
chr4 (254-310)||(20875408-20875463)
chr4 (252-307)||(29051728-29051782)
chr4 (249-321)||(38721378-38721449)
chr4 (262-313)||(51355196-51355248)
[»] chr2 (6 HSPs)
chr2 (239-312)||(24251991-24252063)
chr2 (252-321)||(43444690-43444758)
chr2 (239-312)||(11931722-11931794)
chr2 (252-307)||(36177741-36177796)
chr2 (239-321)||(7666121-7666202)
chr2 (252-306)||(30548876-30548929)
[»] scaffold0225 (1 HSPs)
scaffold0225 (239-321)||(8983-9064)
[»] scaffold0029 (1 HSPs)
scaffold0029 (239-321)||(138180-138261)
[»] chr7 (8 HSPs)
chr7 (480-525)||(2298420-2298465)
chr7 (254-313)||(3785566-3785624)
chr7 (254-312)||(27045567-27045624)
chr7 (239-320)||(4048885-4048964)
chr7 (282-319)||(39278483-39278520)
chr7 (239-307)||(2952453-2952521)
chr7 (254-310)||(16870641-16870696)
chr7 (249-313)||(36515880-36515943)
[»] scaffold0595 (1 HSPs)
scaffold0595 (254-321)||(3994-4060)
[»] chr8 (1 HSPs)
chr8 (254-313)||(33700231-33700289)


Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 3322077 - 3321832
Alignment:
Q  1 tacctttccactttccaaagaacatcactgaatcctctagttccacctaattatnnnnnnntaagagacataatgtttctatatatgatgagatgtcgta 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |||    
T  3322077 tacctttctactttccaaagaacatcactgaatcctctagttccacctaattataaaaaaataagagacataatgtttctatatatgatgagatgtggta 3321978  T
Q  101 aaccaaattaatctatgaaccaatttttaaattgtttgtgtggttgcaatctagctgaattattgtagttattgtgggttcttgcagag-aattgaagtt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  3321977 aaccaaattaatctatgaaccaatttttaaattgtttgtgtggttgcaatctagctgaattattatagttattgtgggttcttgcagagtaattgaagtt 3321878  T
Q  200 gacataattctaattataattttatgtacaacacaatatttttata 245  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  3321877 gacataattctaattataattttatgtacaacacaatattattata 3321832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 397 - 533
Target Start/End: Complemental strand, 3321620 - 3321484
Alignment:
Q  397 gaagaccaaagttgtgtattgacatgaatgaaatgattgactgcaacatgtttttagaaatggagaagtaaataaaacttgcgtaccatgaagagtgttg 496  Q
    ||||| ||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3321620 gaagatcaaagttatgtattgacataaatgaaatgattgactgcgacatgtttttagagatggagaagtaaataaaacttgcgtaccatgaagagtgttg 3321521  T
Q  497 tttccttcattagcaattaatttgtaatgggttccat 533  Q
    |||||||||||||||||||||||||||||||||||||    
T  3321520 tttccttcattagcaattaatttgtaatgggttccat 3321484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 3321779 - 3321699
Alignment:
Q  239 ttttataacatgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagtttgtaa 319  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  3321779 ttttataacatgtattattcacatgatttacattgaccatatctttttaactaatatacaaatataaatgttagtttgtaa 3321699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 3315241 - 3315196
Alignment:
Q  5 tttccactttccaaagaacatcactgaatcctctagttccacctaa 50  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  3315241 tttccactttccaaagaacatcactgaatcctctaggtccacctaa 3315196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 15337519 - 15337591
Alignment:
Q  239 ttttataacatgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttag 312  Q
    ||||| || ||| ||||||||||||| |||| |||||||||| |||||||| |||||||||||| |||| ||||    
T  15337519 ttttacaatatgcattattcacataacttactttgaccatat-tttttaactaatatataaatacaaatattag 15337591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 522
Target Start/End: Complemental strand, 3314611 - 3314568
Alignment:
Q  479 gtaccatgaagagtgttgtttccttcattagcaattaatttgta 522  Q
    ||||||||||||||||| ||||| |||||||||||||| |||||    
T  3314611 gtaccatgaagagtgttatttccctcattagcaattaacttgta 3314568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 31869754 - 31869820
Alignment:
Q  254 tattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagtttgtaaga 321  Q
    ||||| |||||||||| |||||||| | |||||||| |||||||||||| |||||||||  |||||||    
T  31869754 tattcccataatttactttgaccattt-tttttaactaatatataaatacaaatgttagcatgtaaga 31869820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 321
Target Start/End: Complemental strand, 3623927 - 3623860
Alignment:
Q  252 attattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagtttgtaaga 321  Q
    |||||||| ||| ||||| ||||||||||  ||||||| |||||||||||| |||||||||  |||||||    
T  3623927 attattcatatagtttactttgaccatat--ttttaactaatatataaatacaaatgttagcatgtaaga 3623860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 312
Target Start/End: Complemental strand, 14214102 - 14214072
Alignment:
Q  282 tttttaaccaatatataaatataaatgttag 312  Q
    |||||||||||||||||||||||||||||||    
T  14214102 tttttaaccaatatataaatataaatgttag 14214072  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 321
Target Start/End: Original strand, 18998718 - 18998799
Alignment:
Q  239 ttttataacatgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagtttgtaaga 321  Q
    ||||| |||||| |||||||||||| ||||| || ||||||| |||||||| |||||||||||| |||||||||| |||||||    
T  18998718 ttttacaacatgcattattcacatagtttactttaaccatat-tttttaactaatatataaatacaaatgttagtatgtaaga 18998799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 35824991 - 35825063
Alignment:
Q  237 atttttataacatgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatgtt 310  Q
    |||||||||| ||| | |||||| ||||||||  ||||||||| |||||||||||||||||||||| |||||||    
T  35824991 atttttataatatgaactattcatataatttattttgaccata-atttttaaccaatatataaatacaaatgtt 35825063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 32017259 - 32017325
Alignment:
Q  254 tattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagtttgtaaga 321  Q
    ||||||||||| |||| |||| ||||| |||||||| |||||||||||| |||||||||  |||||||    
T  32017259 tattcacataacttactttgatcatat-tttttaactaatatataaatacaaatgttagcatgtaaga 32017325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 13812075 - 13812156
Alignment:
Q  236 tatttttataacatgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagtttgta 318  Q
    |||||||| || |||||||||||||||||||||  || | ||||| |||||||| ||||||| |||| |||| ||||| ||||    
T  13812075 tatttttacaatatgtattattcacataatttattttaatcatat-tttttaactaatatatcaatacaaatattagtatgta 13812156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 4671237 - 4671308
Alignment:
Q  236 tatttttataacatgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatg 308  Q
    |||||| |||| ||||||||||||||||| |||| |||  ||||| ||||||||  ||||||||||| |||||    
T  4671237 tattttgataatatgtattattcacataacttactttgttcatat-tttttaactgatatataaatacaaatg 4671308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 17476933 - 17476981
Alignment:
Q  265 tttacattgaccatatatttttaaccaatatataaatataaatgttagt 313  Q
    ||||| || ||||||| |||||||| |||||||||||| ||||||||||    
T  17476933 tttactttaaccatatttttttaactaatatataaatacaaatgttagt 17476981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 3020430 - 3020362
Alignment:
Q  239 ttttataacatgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatgtt 310  Q
    |||||| | |||||||||||||||||||||| || |||||   |||||||||||||||||||||||||||||    
T  3020430 ttttatgatatgtattattcacataatttactttaaccat---tttttaaccaatatataaatataaatgtt 3020362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 311
Target Start/End: Complemental strand, 23940593 - 23940522
Alignment:
Q  239 ttttataacatgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatgtta 311  Q
    ||||| ||| |||| | |||| |||||||||||||||| ||| |||||||| |||||||||||| ||||||||    
T  23940593 ttttacaacgtgtacttttcatataatttacattgaccttat-tttttaactaatatataaataaaaatgtta 23940522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 321
Target Start/End: Complemental strand, 43181572 - 43181505
Alignment:
Q  254 tattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagtttgtaaga 321  Q
    ||||||| | |||||| |||||||||  |||||||| ||| ||||||||||||| ||||| |||||||    
T  43181572 tattcacttgatttactttgaccatacttttttaactaatgtataaatataaatattagtatgtaaga 43181505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 321
Target Start/End: Complemental strand, 30385361 - 30385295
Alignment:
Q  254 tattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagtttgtaaga 321  Q
    |||||||||| ||||| |||||||||| |||||||| |||||||||||| |||||||||| |||||||    
T  30385361 tattcacatagtttactttgaccatat-tttttaactaatatataaatacaaatgttagtatgtaaga 30385295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 321
Target Start/End: Complemental strand, 7568675 - 7568636
Alignment:
Q  282 tttttaaccaatatataaatataaatgttagtttgtaaga 321  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  7568675 tttttaactaatatataaatataaatgttagtgtgtaaga 7568636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 312
Target Start/End: Complemental strand, 44644576 - 44644514
Alignment:
Q  249 tgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttag 312  Q
    |||||||||||||| | |||| |||| ||||| |||||||| |||||||||||| |||||||||    
T  44644576 tgtattattcacatgacttactttgatcatat-tttttaacaaatatataaatacaaatgttag 44644514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 15382489 - 15382445
Alignment:
Q  403 caaagttgtgtattgacatgaatgaaatgattgactgcaacatgt 447  Q
    ||||||||||||||||||||  || ||||||||||||| ||||||    
T  15382489 caaagttgtgtattgacatgtgtgcaatgattgactgcgacatgt 15382445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 44647934 - 44647863
Alignment:
Q  249 tgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagtttgtaaga 321  Q
    |||||||||||||| | |||  |||| ||||| |||||||| |||||||||||| |||||||||  |||||||    
T  44647934 tgtattattcacatgacttattttgatcatat-tttttaacaaatatataaatacaaatgttagcatgtaaga 44647863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 19903865 - 19903809
Alignment:
Q  255 attcacataatttacattgaccatatatttttaaccaatatataaatataaatgttag 312  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||||||| |||||||||    
T  19903865 attcacataatttactttgaccatata-ttttaactaatatataaatacaaatgttag 19903809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 5472173 - 5472104
Alignment:
Q  248 atgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagtttgta 318  Q
    |||||||||||||||||||||  ||||||| |  ||||||| ||||||||||||| |||||||||| ||||    
T  5472173 atgtattattcacataatttaatttgaccacac-tttttaatcaatatataaatacaaatgttagtatgta 5472104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 2571115 - 2571032
Alignment:
Q  237 atttttataacatgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagtttgtaaga 321  Q
    ||||||||||  || ||||||||||| |||||  ||||| |||| |||||||| |||||||||||| |||||||||  |||||||    
T  2571115 atttttataatgtgcattattcacatgatttattttgactatat-tttttaactaatatataaatacaaatgttagcatgtaaga 2571032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 20875463 - 20875408
Alignment:
Q  254 tattcacataatttacattgaccatatatttttaaccaatatataaatataaatgtt 310  Q
    |||||| ||||||||| |||||||||| |||||||| ||||||||||| ||||||||    
T  20875463 tattcatataatttactttgaccatat-tttttaactaatatataaatgtaaatgtt 20875408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 29051728 - 29051782
Alignment:
Q  252 attattcacataatttacattgaccatatatttttaaccaatatataaatataaat 307  Q
    ||||||||||||| |||| |||||||||| |||||||| |||||||||||| ||||    
T  29051728 attattcacataacttactttgaccatat-tttttaactaatatataaatacaaat 29051782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 38721378 - 38721449
Alignment:
Q  249 tgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagtttgtaaga 321  Q
    |||||||||||||| | |||  |||| ||||| |||||||| |||||||||||| |||||||||  |||||||    
T  38721378 tgtattattcacatgacttattttgatcatat-tttttaacaaatatataaatacaaatgttagcatgtaaga 38721449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 262 - 313
Target Start/End: Complemental strand, 51355248 - 51355196
Alignment:
Q  262 taatttacattgaccatata-tttttaaccaatatataaatataaatgttagt 313  Q
    |||||||| ||||||||||| |||||| | |||||||||||| ||||||||||    
T  51355248 taatttactttgaccatataatttttagctaatatataaatacaaatgttagt 51355196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 24251991 - 24252063
Alignment:
Q  239 ttttataacatgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttag 312  Q
    ||||| || ||||||||||||||||| |||  |||||||||| |||||||| |||||||||||| |||||||||    
T  24251991 ttttacaatatgtattattcacataacttattttgaccatat-tttttaactaatatataaatacaaatgttag 24252063  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 321
Target Start/End: Complemental strand, 43444758 - 43444690
Alignment:
Q  252 attattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagtttgtaaga 321  Q
    |||||||||||||||| | |||||||||| |||||||| |||||||||||| |||||||||  |||||||    
T  43444758 attattcacataattttctttgaccatat-tttttaactaatatataaatacaaatgttagcatgtaaga 43444690  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 11931722 - 11931794
Alignment:
Q  239 ttttataacatgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttag 312  Q
    ||||| || ||| |||||||| |||| |||| |||||||||| |||||||| |||||||||||| |||||||||    
T  11931722 ttttacaatatgcattattcatataacttactttgaccatat-tttttaactaatatataaatacaaatgttag 11931794  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 36177796 - 36177741
Alignment:
Q  252 attattcacataatttacattgaccatatatttttaaccaatatataaatataaat 307  Q
    ||||||||||| |||||  |||||||||| |||||||| |||||||||||| ||||    
T  36177796 attattcacatgatttattttgaccatatttttttaactaatatataaataaaaat 36177741  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 321
Target Start/End: Original strand, 7666121 - 7666202
Alignment:
Q  239 ttttataacatgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagtttgtaaga 321  Q
    ||||||||  || |||||||| ||||||||| ||||||||||| ||||| | |||||||||||| || |||| || |||||||    
T  7666121 ttttataatgtgcattattcatataatttactttgaccatata-ttttatctaatatataaatacaattgttggtatgtaaga 7666202  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 30548876 - 30548929
Alignment:
Q  252 attattcacataatttacattgaccatatatttttaaccaatatataaatataaa 306  Q
    |||||| ||| || |||| |||||||||| |||||||||||||||||||||||||    
T  30548876 attatttacacaaattacgttgaccatat-tttttaaccaatatataaatataaa 30548929  T

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Target: scaffold0225 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 321
Target Start/End: Complemental strand, 9064 - 8983
Alignment:
Q  239 ttttataacatgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagtttgtaaga 321  Q
    ||||| || ||| ||||||||||||| |||| ||||||| || |||||||| |||||||||||| |||||||||  |||||||    
T  9064 ttttacaatatgcattattcacataacttactttgaccacat-tttttaactaatatataaatacaaatgttagcatgtaaga 8983  T

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Target: scaffold0029 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 321
Target Start/End: Complemental strand, 138261 - 138180
Alignment:
Q  239 ttttataacatgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagtttgtaaga 321  Q
    ||||| || ||| ||||||||||||| |||| ||||||| || |||||||| |||||||||||| |||||||||  |||||||    
T  138261 ttttacaatatgcattattcacataacttactttgaccacat-tttttaactaatatataaatacaaatgttagcatgtaaga 138180  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 480 - 525
Target Start/End: Complemental strand, 2298465 - 2298420
Alignment:
Q  480 taccatgaagagtgttgtttccttcattagcaattaatttgtaatg 525  Q
    |||||||||| || ||||||||||||||||||| ||||||||||||    
T  2298465 taccatgaagtgtattgtttccttcattagcaactaatttgtaatg 2298420  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 3785566 - 3785624
Alignment:
Q  254 tattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagt 313  Q
    |||||| ||| ||||| |||||||||| |||||||| |||||||||||| ||||||||||    
T  3785566 tattcatatagtttactttgaccatat-tttttaactaatatataaatacaaatgttagt 3785624  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 27045624 - 27045567
Alignment:
Q  254 tattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttag 312  Q
    |||||||||  ||||| |||||||||| |||||||| |||||||||||| |||||||||    
T  27045624 tattcacatggtttactttgaccatat-tttttaactaatatataaatacaaatgttag 27045567  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 320
Target Start/End: Complemental strand, 4048964 - 4048885
Alignment:
Q  239 ttttataacatgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagtttgtaag 320  Q
    ||||| || |||||||||||| ||||||||| || || |||| |||||||| |||||||||||| ||||| ||| |||||||    
T  4048964 ttttagaatatgtattattcaaataatttacttt-actatat-tttttaactaatatataaatacaaatgctagcttgtaag 4048885  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 39278520 - 39278483
Alignment:
Q  282 tttttaaccaatatataaatataaatgttagtttgtaa 319  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  39278520 tttttaactaatatataaatataaatgttagtatgtaa 39278483  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 2952453 - 2952521
Alignment:
Q  239 ttttataacatgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaat 307  Q
    ||||| ||| || ||||||||| ||  |||| |||||||||| |||||||| ||| |||||||||||||    
T  2952453 ttttacaacgtgcattattcacgtagcttactttgaccatatttttttaactaatttataaatataaat 2952521  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 16870696 - 16870641
Alignment:
Q  254 tattcacataatttacattgaccatatatttttaaccaatatataaatataaatgtt 310  Q
    |||||| |||| |||| |||||||||| || ||||| ||||||||||||||||||||    
T  16870696 tattcaaataacttactttgaccatat-ttgttaactaatatataaatataaatgtt 16870641  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 36515880 - 36515943
Alignment:
Q  249 tgtattattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagt 313  Q
    |||| |||||||| || |||| || ||||||| ||||||| ||||||||||||| ||||||||||    
T  36515880 tgtactattcacacaacttactttaaccatat-tttttaatcaatatataaatacaaatgttagt 36515943  T

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Target: scaffold0595 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 3994 - 4060
Alignment:
Q  254 tattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagtttgtaaga 321  Q
    ||||||||||  |||| |||||||||| |||||||| |||||||||||| |||||||||  |||||||    
T  3994 tattcacatagcttactttgaccatat-tttttaactaatatataaatacaaatgttagcatgtaaga 4060  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 33700289 - 33700231
Alignment:
Q  254 tattcacataatttacattgaccatatatttttaaccaatatataaatataaatgttagt 313  Q
    ||||||||||  |||| |||||||||| |||||||| |||||||||||| ||||||||||    
T  33700289 tattcacatagcttactttgaccatat-tttttaactaatatataaatacaaatgttagt 33700231  T

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