View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12492_low_8 (Length: 540)
Name: NF12492_low_8
Description: NF12492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12492_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Original strand, 39754653 - 39755158
Alignment:
| Q |
18 |
agtacgtacctttggcaactcagaaggggctcaggctagcgtgagcaagcatgtcatgtctcgtatcgtacacaactaaaataatgaatctgaactgtta |
117 |
Q |
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| T |
39754653 |
agtacgtacctttggcaactcagaaggggctcaggctagcgtgagcaagcatgtcatgtctcgtatcgtacacaactaaaataatgaatctgaactgtta |
39754752 |
T |
|
| Q |
118 |
aatcattaagatgcacaatacactgccaatatttttgttgccaagttattggttattttcatcggtttggtttatgattgaaaataacaaatgagtcttt |
217 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39754753 |
aatcattaagatgcacaatacactggcaatattttttttgccaagttattggttattttcatcggtttaatttatgattgaaaataacaaatgagtcttt |
39754852 |
T |
|
| Q |
218 |
gatcattgaaaatatcagagacgtgttttaatcattgaaaagataaaagataacgttaccaatttattaaagnnnnnnnntatctcaaatgggttaatca |
317 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
39754853 |
gatcattgaaaatatcagagacgtgttttaatctttgaaaagataaaagataacgttaccaatttattgaagaaaaaaataatctcaaatgggttaatca |
39754952 |
T |
|
| Q |
318 |
ttttagtggtac---nnnnnnnncctctatgagattatttcggtctacacttaaaaaagttatgtctaaattgtggccannnnnnnctttcaaagataac |
414 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |
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| T |
39754953 |
ttttagtggtactttttttttttcctctatgagattattacggtctacacttaaaaaaattatgtctaagttgtggccatttttttctttcaaagataac |
39755052 |
T |
|
| Q |
415 |
gagacttaagtggcatatgnnnnnnnntgtcataagctctcaagagaaaatcgttattaaatagtataagtttgaacattacttaaagtatagtatatga |
514 |
Q |
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| T |
39755053 |
gagac-tctgtggcatatg--aaaaaatgtcataagctctcgagagaaaatcgttattaaatagtataagtttgaacgttacttaaagtatagtatatga |
39755149 |
T |
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| Q |
515 |
tcatggatc |
523 |
Q |
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| T |
39755150 |
tcatggatc |
39755158 |
T |
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