View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12493_high_10 (Length: 309)

Name: NF12493_high_10
Description: NF12493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12493_high_10
NF12493_high_10
[»] chr1 (5 HSPs)
chr1 (211-294)||(45192152-45192235)
chr1 (45-143)||(45192032-45192132)
chr1 (111-143)||(28235735-28235767)
chr1 (103-143)||(28283015-28283055)
chr1 (16-92)||(48302548-48302624)
[»] chr8 (6 HSPs)
chr8 (148-210)||(31347148-31347210)
chr8 (78-144)||(16089055-16089121)
chr8 (11-72)||(13486535-13486596)
chr8 (78-146)||(8014148-8014216)
chr8 (111-143)||(40484689-40484721)
chr8 (103-143)||(42064199-42064239)
[»] chr3 (10 HSPs)
chr3 (211-278)||(11411709-11411776)
chr3 (40-102)||(11411628-11411690)
chr3 (211-293)||(39749620-39749702)
chr3 (7-54)||(39749570-39749617)
chr3 (25-144)||(39851362-39851485)
chr3 (17-114)||(11675586-11675683)
chr3 (111-143)||(2848494-2848526)
chr3 (16-72)||(11334856-11334912)
chr3 (111-143)||(33635844-33635876)
chr3 (24-92)||(39168503-39168571)
[»] chr5 (3 HSPs)
chr5 (78-144)||(17643496-17643562)
chr5 (26-92)||(6513826-6513892)
chr5 (111-143)||(8760208-8760240)
[»] chr2 (4 HSPs)
chr2 (78-143)||(21799961-21800026)
chr2 (17-115)||(24129428-24129526)
chr2 (111-144)||(3989774-3989807)
chr2 (111-143)||(31901831-31901863)
[»] chr7 (1 HSPs)
chr7 (111-145)||(36098822-36098856)
[»] chr4 (1 HSPs)
chr4 (103-145)||(44352843-44352885)
[»] scaffold0043 (1 HSPs)
scaffold0043 (103-143)||(65108-65148)
[»] chr6 (1 HSPs)
chr6 (103-143)||(6140887-6140927)


Alignment Details
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 211 - 294
Target Start/End: Complemental strand, 45192235 - 45192152
Alignment:
Q  211 cccatgccattttttactaaaattatttaattaaaatctactttagcatcaaaccggtccgattcaccaaaaccgccggttcac 294  Q
    ||||||||| |||||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  45192235 cccatgccaatttttactaaaattatataattaaattctacttcagcatcaaaccggtccggttcaccaaaaccgccggttcac 45192152  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 45192132 - 45192032
Alignment:
Q  45 ccggttcgaatgcatgtccgatccgtttggtgactcgaaccggtcaccttaccgattcccggtcgaacc--ggccgatccggtccggtttttaaaactat 142  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| |||  ||||| |||||| || |||||||||||||    
T  45192132 ccggttcgaatgcatggccgatccgtttggtgactcgaaccggtcaccctaccgattcctggtcggaccggggccggtccggttcgatttttaaaactat 45192033  T
Q  143 g 143  Q
    |    
T  45192032 g 45192032  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 28235735 - 28235767
Alignment:
Q  111 accggccgatccggtccggtttttaaaactatg 143  Q
    |||||||| ||||||||||||||||||||||||    
T  28235735 accggccggtccggtccggtttttaaaactatg 28235767  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 28283015 - 28283055
Alignment:
Q  103 ccggtcgaaccggccgatccggtccggtttttaaaactatg 143  Q
    ||||||| ||||||||||||||| ||| |||||||||||||    
T  28283015 ccggtcggaccggccgatccggttcgggttttaaaactatg 28283055  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 48302624 - 48302548
Alignment:
Q  16 cgagtttcaccgagtcacaccggttcatgccggttcgaatgcatgtccgatccgtttggtgactcgaaccggtcacc 92  Q
    |||||||  ||||||| ||| |||||| ||||||| || |||||| |||||||||||    ||||||||||||||||    
T  48302624 cgagtttggccgagtctcactggttcaggccggtttgattgcatgaccgatccgtttatcaactcgaaccggtcacc 48302548  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 31347148 - 31347210
Alignment:
Q  148 gaacaaaataatgcaaaatttattataatacacttcatgatttacatagacgttgatgaatgc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31347148 gaacaaaataatgcaaaatttattataatacacttcatgatttacatagacgttgatgaatgc 31347210  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 16089055 - 16089121
Alignment:
Q  78 ctcgaaccggtcaccttaccgattcccggtcgaaccggccgatccggtccggtttttaaaactatgg 144  Q
    ||||||||||  |||| |||| |||||||| | ||| |||| |||| ||||||||||||||||||||    
T  16089055 ctcgaaccggatacctcaccggttcccggttggaccagccggtccgatccggtttttaaaactatgg 16089121  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 13486596 - 13486535
Alignment:
Q  11 ttcagcgagtttcaccgagtcacaccggttcatgccggttcgaatgcatgtccgatccgttt 72  Q
    |||| |||||||  ||||||| |||||||||| ||||||| || |||||| |||||||||||    
T  13486596 ttcaccgagtttggccgagtctcaccggttcaggccggtttgattgcatgaccgatccgttt 13486535  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 8014216 - 8014148
Alignment:
Q  78 ctcgaaccggtcaccttaccgattcccggtcgaaccggccgatccggtccggtttttaaaactatggca 146  Q
    |||||||||||||  |  ||| |||||||| |||||||||| ||||  |||| ||||||||||||||||    
T  8014216 ctcgaaccggtcaggtgtccggttcccggttgaaccggccggtccgagccgggttttaaaactatggca 8014148  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 40484721 - 40484689
Alignment:
Q  111 accggccgatccggtccggtttttaaaactatg 143  Q
    |||||||| ||||||||||||||||||||||||    
T  40484721 accggccggtccggtccggtttttaaaactatg 40484689  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 42064199 - 42064239
Alignment:
Q  103 ccggtcgaaccggccgatccggtccggtttttaaaactatg 143  Q
    |||||||||||||||| |||||||||  |||||||||||||    
T  42064199 ccggtcgaaccggccggtccggtccgagttttaaaactatg 42064239  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 211 - 278
Target Start/End: Complemental strand, 11411776 - 11411709
Alignment:
Q  211 cccatgccattttttactaaaattatttaattaaaatctactttagcatcaaaccggtccgattcacc 278  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  11411776 cccatgccattttttactaaaattatttaattaaattctacttcagcatcaaaccggtccggttcacc 11411709  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 11411690 - 11411628
Alignment:
Q  40 tcatgccggttcgaatgcatgtccgatccgtttggtgactcgaaccggtcaccttaccgattc 102  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  11411690 tcatgccggtttgaatgcatggccgatccgtttggtgactcgaaccggtcaccctaccgattc 11411628  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 293
Target Start/End: Complemental strand, 39749702 - 39749620
Alignment:
Q  211 cccatgccattttttactaaaattatttaattaaaatctactttagcatcaaaccggtccgattcaccaaaaccgccggttca 293  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| | ||| |||| |||||| | |||||||    
T  39749702 cccatgccattttttactaaaattatttaattaaattctacttcagcatcaaaccaggccggttcatcaaaactgtcggttca 39749620  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 39749617 - 39749570
Alignment:
Q  7 ggttttcagcgagtttcaccgagtcacaccggttcatgccggttcgaa 54  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||    
T  39749617 ggttttcagcgagtttgaccgagtcacaccggtttatgccggttcgaa 39749570  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 39851362 - 39851485
Alignment:
Q  25 ccgagtcacaccggttcatgccggttcgaatgcatgtccgatccgtttggtgactcgaaccggtcaccttaccgattcccggtcgaaccgg-----ccga 119  Q
    ||||||| || ||||||| ||||||| || |||||| |||||||||||    ||||||||||||||||| |||| ||| |||||| |||||     |||     
T  39851362 ccgagtctcatcggttcaggccggtttgattgcatgaccgatccgtttatcaactcgaaccggtcacctcaccggttcacggtcggaccggttcaaccg- 39851460  T
Q  120 tccggtccggtttttaaaactatgg 144  Q
     ||||||||||||||||||||||||    
T  39851461 gccggtccggtttttaaaactatgg 39851485  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 11675683 - 11675586
Alignment:
Q  17 gagtttcaccgagtcacaccggttcatgccggttcgaatgcatgtccgatccgtttggtgactcgaaccggtcaccttaccgattcccggtcgaaccg 114  Q
    |||||| |||||||||| ||||||||| ||| || || | |||| |||||||||||    ||||||||||||||||  |||| |||| ||||| ||||    
T  11675683 gagtttgaccgagtcacgccggttcattccgatttgattacatgaccgatccgtttatcaactcgaaccggtcaccccaccggttcctggtcggaccg 11675586  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 2848526 - 2848494
Alignment:
Q  111 accggccgatccggtccggtttttaaaactatg 143  Q
    |||||||| ||||||||||||||||||||||||    
T  2848526 accggccggtccggtccggtttttaaaactatg 2848494  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 11334912 - 11334856
Alignment:
Q  16 cgagtttcaccgagtcacaccggttcatgccggttcgaatgcatgtccgatccgttt 72  Q
    |||||||  ||||||| |||||||||| ||||||| || |||||| |||||||||||    
T  11334912 cgagtttggccgagtctcaccggttcaggccggtttgattgcatgaccgatccgttt 11334856  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 33635844 - 33635876
Alignment:
Q  111 accggccgatccggtccggtttttaaaactatg 143  Q
    ||||||||||||||||||||||| |||||||||    
T  33635844 accggccgatccggtccggttttcaaaactatg 33635876  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 39168571 - 39168503
Alignment:
Q  24 accgagtcacaccggttcatgccggttcgaatgcatgtccgatccgtttggtgactcgaaccggtcacc 92  Q
    |||||||||||| || |||  |||||||||| ||||| |||||||||| | |||||| |||||| ||||    
T  39168571 accgagtcacactggctcacaccggttcgaaagcatggccgatccgttagttgactcaaaccggccacc 39168503  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 144
Target Start/End: Complemental strand, 17643562 - 17643496
Alignment:
Q  78 ctcgaaccggtcaccttaccgattcccggtcgaaccggccgatccggtccggtttttaaaactatgg 144  Q
    |||||||||| ||||| |||  ||| |||||| |||||||| |||||||||||||||||||||||||    
T  17643562 ctcgaaccggacacctcaccagttcacggtcggaccggccggtccggtccggtttttaaaactatgg 17643496  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 6513892 - 6513826
Alignment:
Q  26 cgagtcacaccggttcatgccggttcgaatgcatgtccgatccgtttggtgactcgaaccggtcacc 92  Q
    |||||| |||||||||| ||||||| || |||||| |||||||||||    ||||||||||||||||    
T  6513892 cgagtctcaccggttcaggccggtttgattgcatgaccgatccgtttatcaactcgaaccggtcacc 6513826  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 8760240 - 8760208
Alignment:
Q  111 accggccgatccggtccggtttttaaaactatg 143  Q
    ||||||||||||||||||||||| |||||||||    
T  8760240 accggccgatccggtccggttttcaaaactatg 8760208  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 21800026 - 21799961
Alignment:
Q  78 ctcgaaccggtcaccttaccgattcccggtcgaaccggccgatccggtccggtttttaaaactatg 143  Q
    |||||||||| ||||| |||| ||  |||||| |||| ||| ||||||||||||||||||||||||    
T  21800026 ctcgaaccggacacctcaccggttaacggtcggaccgaccggtccggtccggtttttaaaactatg 21799961  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 24129428 - 24129526
Alignment:
Q  17 gagtttcaccgagtcacaccggttcatgccggttcgaatgcatgtccgatccgtttggtgactcgaaccggtcaccttaccgattcccggtcgaaccgg 115  Q
    |||||| |||||||||| ||||||||  |||||| || | |||| |||||||||||    |||||||||||||| |  |||| |||| |||||||||||    
T  24129428 gagtttgaccgagtcacgccggttcagtccggtttgattacatgaccgatccgtttatcaactcgaaccggtcatcccaccggttcctggtcgaaccgg 24129526  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 3989774 - 3989807
Alignment:
Q  111 accggccgatccggtccggtttttaaaactatgg 144  Q
    |||||||| |||||||||||||||||||||||||    
T  3989774 accggccggtccggtccggtttttaaaactatgg 3989807  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 31901831 - 31901863
Alignment:
Q  111 accggccgatccggtccggtttttaaaactatg 143  Q
    ||||||||||||||||||||||| |||||||||    
T  31901831 accggccgatccggtccggttttcaaaactatg 31901863  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 36098856 - 36098822
Alignment:
Q  111 accggccgatccggtccggtttttaaaactatggc 145  Q
    |||||||| ||||||||||||||||||||||||||    
T  36098856 accggccggtccggtccggtttttaaaactatggc 36098822  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 44352843 - 44352885
Alignment:
Q  103 ccggtcgaaccggccgatccggtccggtttttaaaactatggc 145  Q
    |||||||||||||||| |||||||||  |||||||||||||||    
T  44352843 ccggtcgaaccggccggtccggtccgagttttaaaactatggc 44352885  T

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Target: scaffold0043 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 65108 - 65148
Alignment:
Q  103 ccggtcgaaccggccgatccggtccggtttttaaaactatg 143  Q
    ||||||||||||||||||| ||||||  |||||||||||||    
T  65108 ccggtcgaaccggccgatctggtccgagttttaaaactatg 65148  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 6140927 - 6140887
Alignment:
Q  103 ccggtcgaaccggccgatccggtccggtttttaaaactatg 143  Q
    |||||||||||||||||||||||||   |||||||||||||    
T  6140927 ccggtcgaaccggccgatccggtccaagttttaaaactatg 6140887  T

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