View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12493_high_11 (Length: 306)
Name: NF12493_high_11
Description: NF12493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12493_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 96 - 290
Target Start/End: Original strand, 33860185 - 33860379
Alignment:
| Q |
96 |
ctggttcaattcctagatcttttatatttagaaaatctagttgtgaggggaggactcatattgtgcgcgaaacaaattttaggacagagacaagcattct |
195 |
Q |
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| T |
33860185 |
ctggttcaattcctagatcttttatatttagaaaatctagttgtgaggggaggactcatattgtgcgcgaaacaaattttaggacggagacaagcattct |
33860284 |
T |
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| Q |
196 |
taaacaatggtggatactccgtacctataacatggttataaacaaaaatacatactataacatgtttagctttagtctttagtatataagatttt |
290 |
Q |
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| T |
33860285 |
taaacaatggtggatactccgtacctataacatggttataaacaaaaatacatactataacatgtttagctttagtctttagtatataagatttt |
33860379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 33860115 - 33860017
Alignment:
| Q |
1 |
tatttagattaatataacttaccagaatttggctttgttctcagcagggtaatagtacatggtttctgcaggaactccacattctccacctgaatctgg |
99 |
Q |
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| T |
33860115 |
tatttagattaatataacttaccagaatttggctttgttctcagcagggtaatagtacatggtttctgcaggaactccacattctccacctgaatctgg |
33860017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 33870465 - 33870368
Alignment:
| Q |
2 |
atttagattaatataacttaccagaatttggctttgttctcagcagggtaatagtacatggtttctgcaggaactccacattctccacctgaatctgg |
99 |
Q |
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| T |
33870465 |
atttagattaatataactcaccagaatttggctttgttctcagcagggtaatagtacatggtttctgcaggtactccacattctccaccagaatctgg |
33870368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 33875135 - 33875080
Alignment:
| Q |
2 |
atttagattaatataacttaccagaatttggctttgttctcagcagggtaatagta |
57 |
Q |
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| T |
33875135 |
atttagattaataaatattaccagaatttggctttattctcagcagggtaatagta |
33875080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 29534734 - 29534702
Alignment:
| Q |
205 |
gtggatactccgtacctataacatggttataaa |
237 |
Q |
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| T |
29534734 |
gtggatacttcgtacctataacatggttataaa |
29534702 |
T |
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