View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12493_high_12 (Length: 306)
Name: NF12493_high_12
Description: NF12493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12493_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 33860091 - 33860379
Alignment:
| Q |
1 |
ctggtaagttatattaatctaaatacaaaccatgaaccaccaacatatggttggtccgagtgctaaggtactcaaattccttaatcaagtgaccactggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33860091 |
ctggtaagttatattaatctaaatacaaaccatgaaccaccaacatatggttag-ccgagtgctaaggtactcaaattccttaatcaagtgaccactggt |
33860189 |
T |
|
| Q |
101 |
tcaattcctagatcttttatatttagaaaatctagttgtgaggggaggactcatattgtgcgcgaaacaaattttaggacagagacaagcattcttaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33860190 |
tcaattcctagatcttttatatttagaaaatctagttgtgaggggaggactcatattgtgcgcgaaacaaattttaggacggagacaagcattcttaaac |
33860289 |
T |
|
| Q |
201 |
aatggtggatactccgtacctataacatggttataaacaaaaatacatactataacatgtttagctttagtctttagtatataagatttt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33860290 |
aatggtggatactccgtacctataacatggttataaacaaaaatacatactataacatgtttagctttagtctttagtatataagatttt |
33860379 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 29534734 - 29534702
Alignment:
| Q |
205 |
gtggatactccgtacctataacatggttataaa |
237 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
29534734 |
gtggatacttcgtacctataacatggttataaa |
29534702 |
T |
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