View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12493_high_7 (Length: 369)
Name: NF12493_high_7
Description: NF12493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12493_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 4223479 - 4223141
Alignment:
| Q |
19 |
aatactgtgtcgcaacaaagtcaactagaagagttaataacgcagacatcatcgcaaaaaacccggtaaatggaaactctgaccacacgtgagagtaaga |
118 |
Q |
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| T |
4223479 |
aatactgcgtcgcaacaaagtcaactagaagagttaataacgcagacatcatcgcaaaaaacccggtaaatggaaactctgaccacacgtgagagtaaga |
4223380 |
T |
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| Q |
119 |
tttcaaacaactatgattcaaagctttccacgcgtcttgaagcatgtgaacaaaccccgtcgctagtatcactcctgctgcaaaagccttagctgccggt |
218 |
Q |
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| T |
4223379 |
tttcaaacaactatgattcaaagctttccacgcgtcttgaagcatgtgaacaaaccccgtcgctagtatcactcctgctgcaaaagccttagctgccggt |
4223280 |
T |
|
| Q |
219 |
aaaatttcaccatcggatcgtaataatccccgccggtttcccaacaacggtacagcaattccagaaaatccagccactagaattgatgccatagcgacga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4223279 |
aaaatttcaccatcggatcgtaataatccccgccggtttcccaacaacggtacagcaattccagaaaatccagccactagaattgatgccatagcgacga |
4223180 |
T |
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| Q |
319 |
attttaagatcaaagctgctgactcatcgcgacacaggt |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
4223179 |
attttaagatcaaagctgctgactcatcgcgacacaggt |
4223141 |
T |
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