View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12493_high_8 (Length: 343)

Name: NF12493_high_8
Description: NF12493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12493_high_8
NF12493_high_8
[»] scaffold0643 (1 HSPs)
scaffold0643 (1-312)||(7841-8152)
[»] chr2 (2 HSPs)
chr2 (35-302)||(30014166-30014434)
chr2 (189-221)||(27317272-27317304)
[»] chr3 (3 HSPs)
chr3 (105-312)||(17054741-17054948)
chr3 (189-221)||(849559-849591)
chr3 (189-221)||(28795993-28796025)
[»] chr8 (1 HSPs)
chr8 (235-301)||(30251484-30251549)
[»] chr5 (1 HSPs)
chr5 (124-166)||(5008221-5008263)
[»] chr7 (1 HSPs)
chr7 (189-221)||(18865211-18865243)
[»] chr6 (4 HSPs)
chr6 (189-221)||(9632788-9632820)
chr6 (189-221)||(10645480-10645512)
chr6 (189-221)||(24626172-24626204)
chr6 (235-271)||(34430520-34430556)


Alignment Details
Target: scaffold0643 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 8152 - 7841
Alignment:
Q  1 aagaaaacaagcagtaccacatagcaccttagcaactaggacaaactgcacaaacaacacagtccatgacagagataacaaaaaccaccagaaaaatcaa 100  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8152 aagaaaacaagcagtaccacagagcgccttagcaactaggacaaaccgcacaaacaacacagtccacgacagagataacaaaaaccaccagaaaaatcaa 8053  T
Q  101 attccccatctctggctcttctttcctcatctacaaagacagctaattggattccaccgccactcatagtacaagcatgccggaatacgataaacaactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  8052 attccccatctctggctcttctttcctcatctacaaagacaactaattggattccaccgccactcatagtacaagtacgccggaatacgataaacaactt 7953  T
Q  201 atttccagcttatagcacaaagcttgtatgtgtaaaaataaacttgtttttgtatatgttataagctgtttatgtaaactaagcttggaccacttatgaa 300  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7952 atttccaacttatagcacaaagcttgtatgtgtaaaaataaacttgtttttgtatatgttataagctgtttatgtaagctaagcttggaccacttatgaa 7853  T
Q  301 ataagttggaaa 312  Q
    ||||||||||||    
T  7852 ataagttggaaa 7841  T

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Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 35 - 302
Target Start/End: Original strand, 30014166 - 30014434
Alignment:
Q  35 actaggacaaactgcacaaacaacacagtccatgacagagataacaaaaaccaccagaaaaatcaaattccccatctctggctcttctttcctcatctac 134  Q
    |||||||||||| ||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30014166 actaggacaaaccgcacaaacaacacagtccacgatagagataacaaaaaccactagaaaaatcaaattccccatctctggctcttctttcctcatctac 30014265  T
Q  135 aaagacagctaattggattccaccgccactcatagtacaagcatgccggaatacgataaacaacttatttccagcttatagcac-aaagcttgtatgtgt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30014266 aaagacagctaattggattccaccgccactcatagtacaagcatgccggtatacgataaacaacttatttccagcttatagcacaaaagcttgtatgtgt 30014365  T
Q  234 aaaaataaacttgtttttgtatatgttataagctgtttatgtaaactaagcttggaccacttatgaaat 302  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||    
T  30014366 aaaaataaacttgtttttgtatatgttataagctgtttatgtgagctaagcttggaccacttttgaaat 30014434  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 27317304 - 27317272
Alignment:
Q  189 gataaacaacttatttccagcttatagcacaaa 221  Q
    |||||||||||||||| ||||||||||||||||    
T  27317304 gataaacaacttatttgcagcttatagcacaaa 27317272  T

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Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 105 - 312
Target Start/End: Complemental strand, 17054948 - 17054741
Alignment:
Q  105 cccatctctggctcttctttcctcatctacaaagacagctaattggattccaccgccactcatagtacaagcatgccggaatacgataaacaacttattt 204  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||  ||||||||||||||| |||||||||    
T  17054948 cccatctctggctcttctttcctcatctacaaagacaactaattggattccaccaccactcatagtacaagcacaccggaatacgataaataacttattt 17054849  T
Q  205 ccagcttatagcacaaagcttgtatgtgtaaaaataaacttgtttttgtatatgttataagctgtttatgtaaactaagcttggaccacttatgaaataa 304  Q
     || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17054848 tcaacttatagcacaaggcttgtatgtgtaaaaataaacttgtttttgtatatgttataagctgtttatgtaagctaagcttggaccacttatgaaataa 17054749  T
Q  305 gttggaaa 312  Q
    ||||||||    
T  17054748 gttggaaa 17054741  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 849559 - 849591
Alignment:
Q  189 gataaacaacttatttccagcttatagcacaaa 221  Q
    |||||||||||||||| ||||||||||||||||    
T  849559 gataaacaacttatttgcagcttatagcacaaa 849591  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 28796025 - 28795993
Alignment:
Q  189 gataaacaacttatttccagcttatagcacaaa 221  Q
    |||||||||||||||| ||||||||||||||||    
T  28796025 gataaacaacttatttacagcttatagcacaaa 28795993  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 30251549 - 30251484
Alignment:
Q  235 aaaataaacttgtttttgtatatgttataagctgtttatgtaaactaagcttggaccacttatgaaa 301  Q
    |||||||| ||||| ||||||||||||||||||||||   ||| || | ||||||||||||||||||    
T  30251549 aaaataaagttgttattgtatatgttataagctgttttcataagct-atcttggaccacttatgaaa 30251484  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 5008221 - 5008263
Alignment:
Q  124 tcctcatctacaaagacagctaattggattccaccgccactca 166  Q
    ||||||||||||||||||||| || |||||||||| |||||||    
T  5008221 tcctcatctacaaagacagcttatcggattccaccaccactca 5008263  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 18865243 - 18865211
Alignment:
Q  189 gataaacaacttatttccagcttatagcacaaa 221  Q
    |||||||||||||||| ||||||||||||||||    
T  18865243 gataaacaacttatttgcagcttatagcacaaa 18865211  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 9632788 - 9632820
Alignment:
Q  189 gataaacaacttatttccagcttatagcacaaa 221  Q
    |||||||||||||||| ||||||||||||||||    
T  9632788 gataaacaacttatttgcagcttatagcacaaa 9632820  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 10645512 - 10645480
Alignment:
Q  189 gataaacaacttatttccagcttatagcacaaa 221  Q
    |||||||||||||||| ||||||||||||||||    
T  10645512 gataaacaacttatttgcagcttatagcacaaa 10645480  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 24626172 - 24626204
Alignment:
Q  189 gataaacaacttatttccagcttatagcacaaa 221  Q
    |||||||||||||||| ||||||||||||||||    
T  24626172 gataaacaacttatttacagcttatagcacaaa 24626204  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 34430556 - 34430520
Alignment:
Q  235 aaaataaacttgtttttgtatatgttataagctgttt 271  Q
    |||||||| |||||||||||||||||||||| |||||    
T  34430556 aaaataaaattgtttttgtatatgttataaggtgttt 34430520  T

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