View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12493_low_1 (Length: 1107)

Name: NF12493_low_1
Description: NF12493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12493_low_1
NF12493_low_1
[»] chr6 (5 HSPs)
chr6 (7-974)||(11378678-11379658)
chr6 (798-853)||(16260662-16260717)
chr6 (798-856)||(8051014-8051072)
chr6 (798-856)||(26296245-26296303)
chr6 (813-854)||(862883-862924)
[»] chr8 (3 HSPs)
chr8 (163-639)||(2579764-2580244)
chr8 (798-854)||(24185570-24185626)
chr8 (934-1003)||(2580348-2580417)
[»] chr5 (1 HSPs)
chr5 (798-856)||(32522574-32522632)
[»] chr1 (5 HSPs)
chr1 (795-853)||(49166651-49166709)
chr1 (798-853)||(8900833-8900888)
chr1 (798-853)||(32804291-32804346)
chr1 (798-852)||(5347008-5347062)
chr1 (121-162)||(48898744-48898785)
[»] chr7 (1 HSPs)
chr7 (798-853)||(2399739-2399794)
[»] chr2 (1 HSPs)
chr2 (798-857)||(12801085-12801144)
[»] chr4 (1 HSPs)
chr4 (795-853)||(52840307-52840364)


Alignment Details
Target: chr6 (Bit Score: 835; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 835; E-Value: 0
Query Start/End: Original strand, 7 - 974
Target Start/End: Complemental strand, 11379658 - 11378678
Alignment:
Q  7 gcagaacctgtgggttcgtgtgtgttgcgtgcaacagtcaatttgggaaagaaaagggaaaaggaaaatgtgtgtgttctgttgttgagtgagtgctgag 106  Q
    |||||| | |||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11379658 gcagaaacggtgggttcgtgtgtgttgcgtgcagcagttgatttgggaaagaaaagggaaaaggaaaatgtgtgtgttctgttgttgagtgagtgctgag 11379559  T
Q  107 aaaacaaaaatatttgtggctattgccacaccctgccctgttgaggtctgcccctgatgctcaccaacatttatacacagcgctaaaactacaactgagt 206  Q
    |||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11379558 aaaacaaaaatatttgtggctattgccataccctgccctgctcaggtctgcccctgatgctcaccaacatttatacacaacgctaaaactacaactgagt 11379459  T
Q  207 tgtgatcataccacttaaataagtgaaccgtggacaatgtgaattcatggttttgaaaacagtgaggctaagtgcgcctctcgtattgctccaaaagccc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||    
T  11379458 tgtgatcataccacttaaataagtgaaccgtggacaatgtgaattcatggtttcgaaaacagtgaggctaagtgcgc--ctcgtattgctccaaaagccc 11379361  T
Q  307 ctcaccaaccctaagctatcttcggtaattcgagactcgagttggcattcaagtagacatttttctcagtttatcccagtacctgtcatatacacttcct 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11379360 ctcaccaaccctaagctatcttcggtaattcgagactcgagttggcattcaagtagacatttttctcagtttatcccaatacctgtcatatacacttcct 11379261  T
Q  407 caaatccaaatttcattcaagttgaaagtaagccctaccgcccctgttaggtatttcctaaccaaccagctaagattgggactt-acccttcatttttaa 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11379260 caaatccaaatttcattcaagttgaaagtaagccctaccgcccctgttaggtatttcctaaccaaccagctaagattgggacttaacccttcatttttaa 11379161  T
Q  506 taat----------tgtttatttacttttaggacttagccattaatgtttaatggtttagttatgtttattacatagatctctaagccattactttgatt 595  Q
    ||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11379160 taattgtttatttatgtttatttacttttaggacttagccattaatgtttaatggtttagttatgtttattacatagatctctaagccattactttgatt 11379061  T
Q  596 tcttgaaatcaatgtatcccaacatctgtatcaccattaatccattatcattttaaataacatgtatcataccagtattgtattaagtttagtgttagat 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11379060 tcttgaaatcaatgtatcccaacatctgtatcaccattaatccattatcattttaaataacatgtatcataccagtattgtattaagtttagtgttagat 11378961  T
Q  696 tattagtcatcagtgaaaactctg---ggttcttcatttttgttgttaattaaagtgattatattcattgttgaaactaaaatctgatgat-gggtacat 791  Q
    ||||||||||||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  11378960 tattagtcatcagtgaaaactctgataggttcttcatttttgttgctaattaaagtgattatattcattgttgaaactcaaatctgatgatggggtacat 11378861  T
Q  792 ctcttaaataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtattttacattgaataattaatctaccctctcacatttac 891  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||    
T  11378860 ctcttaaataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtatcttacattgaataattaatgtaccctgtcacatttac 11378761  T
Q  892 aaattagatacatttataagttagatacatgaccaaagggagtatgtttttcattgacatgttcacatcacagtatctatgat 974  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11378760 aaattagatacatttataagttagataaatgaccaaagggagtatgtttttcattgacatgttcacatcacagtacctatgat 11378678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 798 - 853
Target Start/End: Complemental strand, 16260717 - 16260662
Alignment:
Q  798 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgta 853  Q
    ||||||||||||| |||||||||||||||  ||||| |||| ||||||||||||||    
T  16260717 aataattaatgtattcagtcacatttataggttagagacattaattattcaatgta 16260662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 798 - 856
Target Start/End: Complemental strand, 8051072 - 8051014
Alignment:
Q  798 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtattt 856  Q
    ||||||||||||| | | ||||||||||| |||| |||||| ||||||||||| |||||    
T  8051072 aataattaatgtatttaatcacatttatagattatatacattaattattcaatatattt 8051014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 798 - 856
Target Start/End: Complemental strand, 26296303 - 26296245
Alignment:
Q  798 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtattt 856  Q
    ||||||||| |||  |||||||||||||| |||| |||||| ||||||| |||||||||    
T  26296303 aataattaacgtatacagtcacatttatagattaaatacattaattatttaatgtattt 26296245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 813 - 854
Target Start/End: Original strand, 862883 - 862924
Alignment:
Q  813 cagtcacatttataaattagatacatgaattattcaatgtat 854  Q
    ||||||||||||||  |||||||||| |||||||||||||||    
T  862883 cagtcacatttataggttagatacattaattattcaatgtat 862924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 163 - 639
Target Start/End: Original strand, 2579764 - 2580244
Alignment:
Q  163 atgctcaccaacatttatacacagcgctaaaactacaactgagttgtgatcataccacttaaataagtgaaccgtggacaatgtgaattcatggtt---- 258  Q
    ||||||||||||||||| ||||| | |  |||| || ||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||        
T  2579764 atgctcaccaacatttacacacatctc--aaaccacgactgagttgtcgtcataccacttaaataagtgaaccgtggacaatgtcaattcatggttcaac 2579861  T
Q  259 ---ttg------aaaacagtgaggctaagtgcgcctctcgtattgctccaaaagcccctcaccaaccctaagctatctt-cggtaattcgagactcgagt 348  Q
       |||      |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| ||       |    
T  2579862 cagttggtttcaaaaacagtgaggctaagtgcgcctctagtattgctccaaaagcccctcaccaaccataagctatctttcggtaattcaag-------t 2579954  T
Q  349 tggcattcaagtagacatttttctcagtttatcccagtacctgtcatatacacttcctcaaatccaaatttcattcaagttgaaagtaagccctaccgcc 448  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  2579955 tggcattcaagtagacatctttctcagtttatcccaatacctgtcatatacacttcctcaaatccaaatttcattcaagttgtaagtaagccccaccgcc 2580054  T
Q  449 cctgttaggtatttcctaaccaaccagctaagattgggactt-acccttcatttttaataattgtttat---------ttacttttaggacttagccatt 538  Q
    |||||||| ||||||||||||||    ||||| || |||||| ||||||||||||||||||||||||||         ||||||||||||||||||||||    
T  2580055 cctgttagatatttcctaaccaa----ctaagtttaggacttaacccttcatttttaataattgtttatttatgtttattacttttaggacttagccatt 2580150  T
Q  539 aatgtttaatggtttagttatgtttattacatagatctctaagccattactttgatttcttgaaatcaatgtatcccaacatctgtatcaccattaatcc 638  Q
     |||||||||||||||       ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  2580151 gatgtttaatggttta-------ttattacttagatctctaagccattactttcatttcttgaaatcaatgtatcccaagatctgtatcaccattaatcc 2580243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 798 - 854
Target Start/End: Complemental strand, 24185626 - 24185570
Alignment:
Q  798 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtat 854  Q
    |||||||||||||  ||||||||||||||  ||||||| || |||||||||||||||    
T  24185626 aataattaatgtatccagtcacatttataggttagatatattaattattcaatgtat 24185570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 934 - 1003
Target Start/End: Original strand, 2580348 - 2580417
Alignment:
Q  934 tatgtttttcattgacatgttcacatcacagtatctatgatctaccatttgtggcagacacggtgaaaag 1003  Q
    ||||||| | |||||||| |||| ||||||||| |||||||||| ||||||   || |||||||||||||    
T  2580348 tatgtttctaattgacatattcatatcacagtacctatgatctatcatttgcaacacacacggtgaaaag 2580417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 798 - 856
Target Start/End: Original strand, 32522574 - 32522632
Alignment:
Q  798 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtattt 856  Q
    |||||||||||||  |||||||||||||| || |||||||| |||||||||||||||||    
T  32522574 aataattaatgtatgcagtcacatttatagatcagatacattaattattcaatgtattt 32522632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 795 - 853
Target Start/End: Original strand, 49166651 - 49166709
Alignment:
Q  795 ttaaataattaatgtactcagtcacatttataaattagatacatgaattattcaatgta 853  Q
    ||||||||||||||||  ||||||||||||||  |||||||||| ||||||||||||||    
T  49166651 ttaaataattaatgtatccagtcacatttataggttagatacattaattattcaatgta 49166709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 798 - 853
Target Start/End: Complemental strand, 8900888 - 8900833
Alignment:
Q  798 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgta 853  Q
    |||||||||||||  | ||||||||||||  |||||||||| ||||||||||||||    
T  8900888 aataattaatgtatccggtcacatttataggttagatacattaattattcaatgta 8900833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 798 - 853
Target Start/End: Original strand, 32804291 - 32804346
Alignment:
Q  798 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgta 853  Q
    ||||||||||||| |||||||||||||||   ||||||||| ||| ||||||||||    
T  32804291 aataattaatgtattcagtcacatttatatgatagatacattaatgattcaatgta 32804346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 798 - 852
Target Start/End: Original strand, 5347008 - 5347062
Alignment:
Q  798 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgt 852  Q
    |||||||||||||  || ||||||||||| |||||||| || |||||||||||||    
T  5347008 aataattaatgtatccattcacatttatatattagatatattaattattcaatgt 5347062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 48898785 - 48898744
Alignment:
Q  121 tgtggctattgccacaccctgccctgttgaggtctgcccctg 162  Q
    |||||||||||||||||||||||||| | ||||| |||||||    
T  48898785 tgtggctattgccacaccctgccctgctcaggtccgcccctg 48898744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 798 - 853
Target Start/End: Complemental strand, 2399794 - 2399739
Alignment:
Q  798 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgta 853  Q
    |||||||||||||  | ||||||||||||| |||||||||| || |||||||||||    
T  2399794 aataattaatgtatccggtcacatttataagttagatacattaactattcaatgta 2399739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 798 - 857
Target Start/End: Complemental strand, 12801144 - 12801085
Alignment:
Q  798 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtatttt 857  Q
    |||||||||| || | ||||||||||||| |||| |||||| |||||||||||| |||||    
T  12801144 aataattaatatatttagtcacatttatagattaaatacattaattattcaatgaatttt 12801085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 795 - 853
Target Start/End: Complemental strand, 52840364 - 52840307
Alignment:
Q  795 ttaaataattaatgtactcagtcacatttataaattagatacatgaattattcaatgta 853  Q
    |||||||||||||||| || ||||||||||||  |||||||||| ||||||| ||||||    
T  52840364 ttaaataattaatgta-tcggtcacatttatatgttagatacattaattatttaatgta 52840307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University