View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12493_low_13 (Length: 294)
Name: NF12493_low_13
Description: NF12493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12493_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 43 - 279
Target Start/End: Complemental strand, 552623 - 552385
Alignment:
| Q |
43 |
ttctatggtttggtgttaatattattctgcaaatttaattcttgattgtctctttcatttctgcagatacttgagaaaatattctctgctaattactcat |
142 |
Q |
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| T |
552623 |
ttctatggtttggtgttaatattattctgcaaatttaattcttgattgtctctttcatttctgcagatacttgagaaaatattctctgctaattactcat |
552524 |
T |
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| Q |
143 |
atccatcggggtttaaatcttatttcctgagttgtatttgaagatagattgcatgcttgaaatatgcaagtcttcattgtgttgaaagttccatgaaata |
242 |
Q |
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| T |
552523 |
atccatcggggtttaaatcttatttcctgagttgtatttgaagatagattgcatgcttgaaatatgcaagtcttcattgtgttgaaagttccatgaaata |
552424 |
T |
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| Q |
243 |
ttggcatctttctgcac--gccaacatattatgtctctg |
279 |
Q |
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| T |
552423 |
ttggcatctttctgcacgtgccaacatattatgtctctg |
552385 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 167
Target Start/End: Original strand, 51114421 - 51114543
Alignment:
| Q |
45 |
ctatggtttggtgttaatattattc---tgcaaatttaattcttgattgtctctttcatttctgcagatacttgagaaaatattctctgctaattactca |
141 |
Q |
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| T |
51114421 |
ctatggtttggtgttaatattattctagtacaaatttaattcttgattatctctttc-tttttttagatatctgagaaaatat--tctgcaaattattca |
51114517 |
T |
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| Q |
142 |
tatccatcggggtttaaatcttattt |
167 |
Q |
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| T |
51114518 |
tgtccattggtgtttgaaccttattt |
51114543 |
T |
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