View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12493_low_2 (Length: 547)
Name: NF12493_low_2
Description: NF12493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12493_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 3e-77; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 11411705 - 11411914
Alignment:
| Q |
12 |
aacctgtgaaccggaccggtttgatgctgaagtagattttaattaaataatttaagtaaaaaatggcatgggtggggtgtagaacccatgaccagtgatc |
111 |
Q |
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| T |
11411705 |
aaccggtgaaccggaccggtttgatgctgaagtagaatttaattaaataattttagtaaaaaatggcatgggtggg-tgtagaacccgagaccagtgatc |
11411803 |
T |
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| Q |
112 |
ttttgtgtaaatgctttaccattgcaccacatgaaattttatgattagaacatgcttctacatacttatatatattaaaaacatcttcaaatagaaacac |
211 |
Q |
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| T |
11411804 |
tgctgtgtaaatactttaccattgcaccacatataattttatgattagttcatgcttctacattcttatatatattaaaaacatcttcaaatagaaaaac |
11411903 |
T |
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| Q |
212 |
aacataaacgc |
222 |
Q |
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| T |
11411904 |
aacataaacgc |
11411914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 337 - 532
Target Start/End: Original strand, 11412072 - 11412270
Alignment:
| Q |
337 |
gaactatacttgaataaaaacacaattataaaatacaaaataatttcataagcctttt---acttgtnnnnnnnngttcataaacattttctttgattac |
433 |
Q |
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| T |
11412072 |
gaactatacttgaataaaaaaacaattataaaatacaaaataatttcataagcatttttttacttgtaaaaaaaagttcataaacattttctttgattac |
11412171 |
T |
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| Q |
434 |
aactatcacacttagtttttatttttgttgtagatgtaaagtgaaatgnnnnnnnnaaggatgtaaagtgaaatgttttttaatatttatttgaatatg |
532 |
Q |
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| T |
11412172 |
aactatcacacttagtttttatttttgttgtagatgtaaagtgaaatgttttttttaaggatgtaaagtgaaatgttttttaatatttatttgaatatg |
11412270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 39749637 - 39749706
Alignment:
| Q |
18 |
tgaaccggaccggtttgatgctgaagtagattttaattaaataatttaagtaaaaaatggcatgggtggg |
87 |
Q |
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| T |
39749637 |
tgaaccggcctggtttgatgctgaagtagaatttaattaaataattttagtaaaaaatggcatgggtggg |
39749706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 337 - 435
Target Start/End: Original strand, 39749913 - 39750012
Alignment:
| Q |
337 |
gaactatacttgaataaaaaca-caattataaaatacaaaataatttcataagccttttacttgtnnnnnnnngttcataaacattttctttgattacaa |
435 |
Q |
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| T |
39749913 |
gaactatacttgaataaaaaaaactattataaaatacaaaataatttcataagcattttacttgtataaaaaagttcattaacattttatttgattacaa |
39750012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 39749747 - 39749804
Alignment:
| Q |
166 |
cttctacatacttatatatattaaaaacatcttcaaatagaaacacaacataaacgca |
223 |
Q |
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| T |
39749747 |
cttctgcatacttatatatattaaaaacattttcaaataggaaaacaatttaaacgca |
39749804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 373 - 532
Target Start/End: Original strand, 45192850 - 45193010
Alignment:
| Q |
373 |
aaaataatttcataagccttttacttgtnnnnnnnn-gttcataaacattttctttgattacaactatcacacttagtttttatttttgttgtagatgta |
471 |
Q |
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| T |
45192850 |
aaaataatttcataagcattttacttgtaaaaaaaaagttcataaacattttctttgattacaactatcacacttagtttttatttttgttgtagatgta |
45192949 |
T |
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| Q |
472 |
aagtgaaatgnnnnnnnnaaggatgtaaagtgaaatgttttttaatatttatttgaatatg |
532 |
Q |
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| T |
45192950 |
aagtgaaatgttttttttaaggatgtaaagtgaaatgttttttaatatttatttgaatatg |
45193010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 45192169 - 45192337
Alignment:
| Q |
17 |
gtgaaccggaccggtttgatgctgaagtagattttaattaaataatttaagtaaaaaatggcatgggtggggtgtagaacccatgaccagtgatcttttg |
116 |
Q |
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| T |
45192169 |
gtgaaccggaccggtttgatgctgaagtagaatttaattatataattttagtaaaaattggcatgggt-gggtgttgaacccgtgaccagtgatttgctg |
45192267 |
T |
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| Q |
117 |
tgtaaatgctttaccattgcaccacatgaaattttatgattagaacatgcttctacatacttatatatat |
186 |
Q |
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| T |
45192268 |
gataaatgctttaccattgcaccacatagaatttcataattagtacatgcttctacatagttatatatat |
45192337 |
T |
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