View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12493_low_3 (Length: 489)

Name: NF12493_low_3
Description: NF12493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12493_low_3
NF12493_low_3
[»] chr5 (2 HSPs)
chr5 (1-471)||(42333166-42333634)
chr5 (35-87)||(6023094-6023146)
[»] chr2 (4 HSPs)
chr2 (1-394)||(29060302-29060688)
chr2 (218-322)||(5539467-5539571)
chr2 (226-285)||(18697279-18697338)
chr2 (218-283)||(32487786-32487851)
[»] chr6 (4 HSPs)
chr6 (1-453)||(9856548-9856996)
chr6 (218-284)||(28591028-28591094)
chr6 (225-285)||(9312787-9312847)
chr6 (218-283)||(14392736-14392801)
[»] chr3 (2 HSPs)
chr3 (13-451)||(33335216-33335653)
chr3 (38-90)||(21736866-21736918)
[»] chr7 (6 HSPs)
chr7 (158-282)||(13760487-13760611)
chr7 (260-334)||(40055984-40056058)
chr7 (381-453)||(40054182-40054254)
chr7 (159-271)||(47801115-47801227)
chr7 (239-298)||(1717991-1718050)
chr7 (13-65)||(48778372-48778424)
[»] chr1 (2 HSPs)
chr1 (172-285)||(16587155-16587268)
chr1 (13-65)||(23027988-23028040)
[»] chr4 (3 HSPs)
chr4 (242-286)||(55431910-55431954)
chr4 (40-72)||(32808048-32808080)
chr4 (218-286)||(54846001-54846069)
[»] scaffold1185 (1 HSPs)
scaffold1185 (224-282)||(1691-1749)
[»] chr8 (1 HSPs)
chr8 (229-286)||(29935928-29935985)


Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 42333634 - 42333166
Alignment:
Q  1 gggaggcacggttgggaggttgattgtggggcgtggttgtggaggcgtcggttgtttgcgtgggaagaagagagcgtgaggaagtgttcttttttattaa 100  Q
    |||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42333634 gggaggcgtggttgggaggttgatggtggggcgtggttgtggaggcgtcggttgtttgcctgggaagaagagagcgtgaggaagtgttcttttttattaa 42333535  T
Q  101 catatcattgtgttgcaggatgatgttcacgacactaagaggtggcaattgtatccagttcatgggtactcggtgcgggaatcctatcggtttattacta 200  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||    
T  42333534 catatcattgtgttgcag--tgatgttcacgacactaagaggtggcaattgtatccagttcatgggtacttggtgggggaatcctattggtttattacta 42333437  T
Q  201 ataatggtgacatgttagatatgactcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtggcgtttgctccgtaacaa 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||     
T  42333436 ataatggtgacatgttagataggactcttgtcgacgacgtttgacataaatctattcattcaaaggtgtctttgctggtgtggcgtttgctccgtaacag 42333337  T
Q  301 agttcatacgaaagacaatttgttgcatcgtggagtaatgccttcaactgacacggcttgtttgggagggtgtggtacaactgaaactgctaaacacctt 400  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  42333336 agttcctacgaaagacaatttgttgcattgtggagtaatgccttcaactgacatggcttgtgtgggagggtgtggtacaactgaaactgctaaacacctt 42333237  T
Q  401 ttccttcattgcaatattttgagtgagttgtggtatcaggtatggaagtggttagctattttttcggtgca 471  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42333236 ttccttcattgcaatatttcgagtgagttgtggtatcaggtatggaagtggttaggtattttttcggtgca 42333166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 6023146 - 6023094
Alignment:
Q  35 ggttgtggaggcgtcggttgtttgcgtgggaagaagagagcgtgaggaagtgt 87  Q
    |||||||| | ||||||||||| ||||||||||| ||||| |||||| |||||    
T  6023146 ggttgtggcgtcgtcggttgttggcgtgggaagaggagagtgtgagggagtgt 6023094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 203; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 29060688 - 29060302
Alignment:
Q  1 gggaggcacggttgggaggttgattgtggggcgtggttgtggaggcgtcggttgtttgcgtgggaagaagagagcgtgaggaagtgttcttttttattaa 100  Q
    ||||||| |||||||| ||||||| |||||||||||      ||||||| ||||||||||||||||||| |||||||| |  |||||||| |||||||||    
T  29060688 gggaggcgcggttgggtggttgatggtggggcgtgg------aggcgtcagttgtttgcgtgggaagaatagagcgtgggagagtgttctcttttattaa 29060595  T
Q  101 catatcattgtgttgcaggatgatgttcacgacactaagaggtggcaattgtatccagttcatgggtactcggtgcgggaatcctatcggtttattacta 200  Q
     ||| || ||||||||| ||||||||||||||| ||   | |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  29060594 -ataacactgtgttgcaagatgatgttcacgactcttgaaagtggcaattggatctagttcatgggtactcggtgcgggaatcctatcggtttattatta 29060496  T
Q  201 ataatggtgacatgttagatatgactcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtggcgtttgctccgtaacaa 300  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||| |  ||||||||||||||||||||||||||||     
T  29060495 ataatggtgacatgttagataggactcttgtcgacgacgtttagcataaatcaattccttgaaaggtattgttgttggtgtggcgtttgctccgtaacag 29060396  T
Q  301 agttcatacgaaagacaatttgttgcatcgtggagtaatgccttcaactgacacggcttgtttgggagggtgtggtacaactgaaactgctaaa 394  Q
    ||||| ||||||||| ||||||||||||||||||||  |  | |||||||| ||| ||||| |||||||||||||||| || ||||||||||||    
T  29060395 agttcctacgaaagataatttgttgcatcgtggagttctaacctcaactgagacgacttgtgtgggagggtgtggtactaccgaaactgctaaa 29060302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 322
Target Start/End: Original strand, 5539467 - 5539571
Alignment:
Q  218 gatatgactcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtggcgtttgctccgtaacaaagttcatacgaaagaca 317  Q
    |||||||||||||| |||||| | ||||||||   ||||||||||||||||||| |||| ||||||||  | || || |||| | ||| ||| |||||||    
T  5539467 gatatgactcttgttgacgacatctggcataagcatattccttcaaaggtgtctctgtttgtgtggcgcctcctacgcaacagacttcctactaaagaca 5539566  T
Q  318 atttg 322  Q
    |||||    
T  5539567 atttg 5539571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 18697338 - 18697279
Alignment:
Q  226 tcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtggcg 285  Q
    |||||| |||||| |||||||||||   |||||||||||||||||||||||  |||||||    
T  18697338 tcttgttgacgacatttggcataaaaacattccttcaaaggtgtctttgtttctgtggcg 18697279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 32487851 - 32487786
Alignment:
Q  218 gatatgactcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtgg 283  Q
    |||| ||||||||| |||||||| ||||||||   ||||||||||||| ||||| |||| ||||||    
T  32487851 gataggactcttgttgacgacgtctggcataagcatattccttcaaagttgtctctgtttgtgtgg 32487786  T

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Target: chr6 (Bit Score: 135; Significance: 4e-70; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 9856996 - 9856548
Alignment:
Q  1 gggaggcacggttgggaggttgattgtggggcgtggttgtggaggcgtcggttgtttgcgtgggaagaagagagcgtgaggaagtgttcttttttattaa 100  Q
    ||||||| ||||||||||  | || |||||| |||| |||||||  | | ||||||||| ||| ||||||||||  ||||| |||||||   |||||||     
T  9856996 gggaggcgcggttgggagcctaatggtggggtgtgggtgtggagatgccagttgtttgcatggaaagaagagagtctgagggagtgttccactttatta- 9856898  T
Q  101 catatcattgtgttgcaggatgatgttcacgacactaagaggtggcaattgtatccagttcatgggtactcggtgcgggaatcctatcggtttattacta 200  Q
    |||| || ||| ||| ||||| ||| ||| |   ||  ||||||||| || |||||||||||||||||||| ||| | ||||||| |||||| |||||||    
T  9856897 cataacactgttttgtaggataatgctcatg---cttggaggtggcatttctatccagttcatgggtactcagtgtgtgaatcctgtcggttcattacta 9856801  T
Q  201 ataatggtgacatgttagatatgactcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtggcgtttgctccgtaacaa 300  Q
    ||| || ||||||||||||||  | | |||| ||||||||||| | ||| |  ||||| ||||||||||| |||||||||||||| ||||||||||| |     
T  9856800 atactgctgacatgttagatagaattattgtagacgacgtttgacgtaagtgaattccgtcaaaggtgtccttgttggtgtggcgcttgctccgtaatag 9856701  T
Q  301 agttcatacgaaagacaatttgttgcatcgtggagtaatgccttcaactgacacggcttgtttgggagggtgtggtacaactgaaactgctaaacacctt 400  Q
    ||||| ||||||||| |||||| ||||||||||| |  ||||| ||||||||||||| ||| |||  ||||||| |||||| ||||||||| ||||||||    
T  9856700 agttcctacgaaagataatttggtgcatcgtggaattttgcctacaactgacacggcctgtgtggttgggtgtgatacaaccgaaactgctgaacacctt 9856601  T
Q  401 ttccttcattgcaatattttgagtgagttgtggtatcaggtatggaagtggtt 453  Q
    ||||||||||||| | ||| ||||||  | |||||||| || |||||||||||    
T  9856600 ttccttcattgcactttttcgagtgacctttggtatcatgtgtggaagtggtt 9856548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 284
Target Start/End: Original strand, 28591028 - 28591094
Alignment:
Q  218 gatatgactcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtggc 284  Q
    |||||||||||||| ||||| ||||||||| ||| ||||  ||||||||||||| |||| |||||||    
T  28591028 gatatgactcttgttgacgatgtttggcatcaatatattatttcaaaggtgtctctgtttgtgtggc 28591094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 9312787 - 9312847
Alignment:
Q  225 ctcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtggcg 285  Q
    |||| ||||||||| |||| ||||||  |||||| ||||||||||||||||| ||||||||    
T  9312787 ctctagtcgacgacatttgacataaacatattccctcaaaggtgtctttgttcgtgtggcg 9312847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 14392801 - 14392736
Alignment:
Q  218 gatatgactcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtgg 283  Q
    |||| ||||||||| ||| |||| || ||||| | ||||||||||||||||||| |||| ||||||    
T  14392801 gataggactcttgttgacaacgtctgacataagtatattccttcaaaggtgtctctgtttgtgtgg 14392736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 4e-70; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 13 - 451
Target Start/End: Complemental strand, 33335653 - 33335216
Alignment:
Q  13 tgggaggttgattgtggggcgtggttgtggaggcgtcggttgtttgcgtgggaagaagagagcgtgaggaagtgttcttttttattaacatatcattgtg 112  Q
    |||||| | ||| ||| ||||||| ||||||| |||||  |||||||||| || || ||| |||||||| |||| ||  |||||||| |||| ||||||     
T  33335653 tgggagatagatggtgaggcgtgggtgtggagacgtcgtctgtttgcgtgagaggaggagcgcgtgagggagtgctccattttatta-cataacattgtc 33335555  T
Q  113 ttgcaggatgatgttcacgacactaagaggtggcaattgtatccagttcatgggtactcggtgcgggaatcctatcggtttattactaataatggtgaca 212  Q
    ||||||||| ||||||||||||||  ||||||||| ||  |||| || ||||||||||||||||||||||||| |||||||||||||| |   |||||||    
T  33335554 ttgcaggataatgttcacgacacttggaggtggcatttagatcctgtgcatgggtactcggtgcgggaatcctttcggtttattactagttcaggtgaca 33335455  T
Q  213 tgttagatatgactcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtggcgtttgctccgtaacaaagttcatacgaa 312  Q
    || | |||| ||||||||| ||||||||||||||||||  | ||||||||||||||||| | |||||||||||  | || ||||| | ||||| ||| ||    
T  33335454 tggtggataagactcttgttgacgacgtttggcataaacatgttccttcaaaggtgtctctattggtgtggcgccttcttcgtaatagagttcctaccaa 33335355  T
Q  313 agacaatttgttgcatcgtggagtaatgccttcaactgacacggcttgtttgggagggtgtggtacaactgaaactgctaaacaccttttccttcattgc 412  Q
    | |||| |||   |||||||| ||  ||||| ||| ||||||||||||| |||  || ||||||| | | |||||| || |||||||||||||||| |||    
T  33335354 aaacaacttgacacatcgtggtgttttgcctacaaatgacacggcttgtgtggctggttgtggtatatccgaaactactcaacaccttttccttcaatgc 33335255  T
Q  413 aatattttgagtgagttgtggtatcaggtatggaagtgg 451  Q
    ||||||| || |||| | |||| |||||| |||||||||    
T  33335254 aatatttcgaatgagctatggtctcaggtgtggaagtgg 33335216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 21736866 - 21736918
Alignment:
Q  38 tgtggaggcgtcggttgtttgcgtgggaagaagagagcgtgaggaagtgttct 90  Q
    |||||||||| ||||||||||| ||||| || ||||| |||||| ||||||||    
T  21736866 tgtggaggcgccggttgtttgcttgggaggaggagagtgtgagggagtgttct 21736918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 282
Target Start/End: Original strand, 13760487 - 13760611
Alignment:
Q  158 gttcatgggtactcggtgcgggaatcctatcggtttattactaataatggtgacatgttagatatgactcttgtcgacgacgtttggcataaatctattc 257  Q
    |||||||| |||||| |||| | ||| ||||| ||||||||||||   ||||| |  || |||||||||||||| |||||||| ||||||||   ||| |    
T  13760487 gttcatggctactcgatgcgaggatcatatcgctttattactaattcaggtgaaactttggatatgactcttgttgacgacgtctggcataagcatatcc 13760586  T
Q  258 cttcaaaggtgtctttgttggtgtg 282  Q
    |||||||||||||| ||||||||||    
T  13760587 cttcaaaggtgtctctgttggtgtg 13760611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 40056058 - 40055984
Alignment:
Q  260 tcaaaggtgtctttgttggtgtggcgtttgctccgtaacaaagttcatacgaaagacaatttgttgcatcgtgga 334  Q
    ||||||||||| ||||||||||| || ||||||| ||| | ||| | |||||||||||||||| |||||||||||    
T  40056058 tcaaaggtgtccttgttggtgtgtcgcttgctccataatagagtccctacgaaagacaatttggtgcatcgtgga 40055984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 453
Target Start/End: Complemental strand, 40054254 - 40054182
Alignment:
Q  381 ctgaaactgctaaacaccttttccttcattgcaatattttgagtgagttgtggtatcaggtatggaagtggtt 453  Q
    ||||||||||| ||||||| ||||||||||||| | ||| |||||   | ||||||||||| |||||||||||    
T  40054254 ctgaaactgctgaacacctcttccttcattgcactttttcgagtgccctttggtatcaggtgtggaagtggtt 40054182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 271
Target Start/End: Complemental strand, 47801227 - 47801115
Alignment:
Q  159 ttcatgggtactcggtgcgggaatcctatcggtttattactaataatggtgacatgttagatatgactcttgtcgacgacgtttggcataaatctattcc 258  Q
    ||||||| || || ||| ||||| |||| |||||| ||||| ||   ||||||||| | |||| ||||||||| || ||||| |||||||||  ||| ||    
T  47801227 ttcatggttattcagtgtgggaagcctaccggtttgttactcattcaggtgacatggtggataggactcttgtggatgacgtatggcataaacatatccc 47801128  T
Q  259 ttcaaaggtgtct 271  Q
    |||||||||||||    
T  47801127 ttcaaaggtgtct 47801115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 1717991 - 1718050
Alignment:
Q  239 gtttggcataaatctattccttcaaaggtgtctttgttggtgtggcgtttgctccgtaac 298  Q
    |||||||||||   |||||| |||||||| |||||||||||||||||||| || ||||||    
T  1717991 gtttggcataagcatattccctcaaaggtttctttgttggtgtggcgtttacttcgtaac 1718050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 48778424 - 48778372
Alignment:
Q  13 tgggaggttgattgtggggcgtggttgtggaggcgtcggttgtttgcgtggga 65  Q
    |||||||| ||| || |||||||||||||||| ||||| |||||||| |||||    
T  48778424 tgggaggtggatggtcgggcgtggttgtggagacgtcgtttgtttgcttggga 48778372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 172 - 285
Target Start/End: Original strand, 16587155 - 16587268
Alignment:
Q  172 ggtgcgggaatcctatcggtttattactaataatggtgacatgttagatatgactcttgtcgacgacgtttggcataaatctattccttcaaaggtgtct 271  Q
    |||||||||| | ||||| ||| ||||||| || |||||  |  | |||||||||||||| || ||||| ||||||||   |||||| ||||||||||||    
T  16587155 ggtgcgggaagcatatcgctttcttactaacaacggtgaactagtggatatgactcttgttgatgacgtctggcataagcatattccatcaaaggtgtct 16587254  T
Q  272 ttgttggtgtggcg 285  Q
     |||| ||||||||    
T  16587255 ctgtttgtgtggcg 16587268  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 23028040 - 23027988
Alignment:
Q  13 tgggaggttgattgtggggcgtggttgtggaggcgtcggttgtttgcgtggga 65  Q
    |||||||| ||| || |||||||||||||||| ||||| |||||||| |||||    
T  23028040 tgggaggtggatggtcgggcgtggttgtggagacgtcgtttgtttgcttggga 23027988  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 55431910 - 55431954
Alignment:
Q  242 tggcataaatctattccttcaaaggtgtctttgttggtgtggcgt 286  Q
    |||||||||  ||| ||||||||||||||||||||||||||||||    
T  55431910 tggcataaacatatcccttcaaaggtgtctttgttggtgtggcgt 55431954  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 32808080 - 32808048
Alignment:
Q  40 tggaggcgtcggttgtttgcgtgggaagaagag 72  Q
    ||||||||| |||||||||||||||||||||||    
T  32808080 tggaggcgtaggttgtttgcgtgggaagaagag 32808048  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 54846069 - 54846001
Alignment:
Q  218 gatatgactcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtggcgt 286  Q
    ||||||||||| || ||||| || ||||| |||  |||||| | ||||||||||||||| |||||||||    
T  54846069 gatatgactctggttgacgatgtctggcaaaaacatattcccttaaaggtgtctttgtttgtgtggcgt 54846001  T

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Target: scaffold1185 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1185
Description:

Target: scaffold1185; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 282
Target Start/End: Original strand, 1691 - 1749
Alignment:
Q  224 actcttgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtg 282  Q
    |||||||| ||| |||| || ||||| | |||||||||||||||||||||||| |||||    
T  1691 actcttgttgacaacgtctgacataagtatattccttcaaaggtgtctttgtttgtgtg 1749  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 29935985 - 29935928
Alignment:
Q  229 tgtcgacgacgtttggcataaatctattccttcaaaggtgtctttgttggtgtggcgt 286  Q
    |||||| ||||||||||| ||   |||||||||||||||||| ||||| |||||||||    
T  29935985 tgtcgatgacgtttggcacaaggttattccttcaaaggtgtccttgttcgtgtggcgt 29935928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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