View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12493_low_4 (Length: 462)
Name: NF12493_low_4
Description: NF12493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12493_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 6838439 - 6837991
Alignment:
| Q |
1 |
tttcccatcccacccaaaccaactatgctgatagttgatactttgttgtcattgtccttgtaagacagcaaatagttaattatttcttctttttcacctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6838439 |
tttcccatcccacccaaaccaactatgctgatagttgatacttggttgccattgtccttgtaagacagcaaatagttaattatttcttctttttcacctt |
6838340 |
T |
|
| Q |
101 |
ctctaccacgtatgtcagattcattcaccaaggatgaagttggcgatctttttgaggattgcaagctaactacaccttcatgactagtgcaacttctttt |
200 |
Q |
| |
|
|||||||||||||| |||||||| |||||| |||| |||||| ||||||||||||||||| |||||| | ||||||| ||||||||||||||||| |
|
|
| T |
6838339 |
ctctaccacgtatggaagattcatccaccaaagatgcagttggagatctttttgaggattgtgggctaaccgcgccttcataactagtgcaacttctttg |
6838240 |
T |
|
| Q |
201 |
agtcaatcccaaatcatccttttgctctgcaagatgttttagcttgcctaacaactctttgatcctagattcaaatggattagtgatagctgaaagcaag |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6838239 |
tgtcaatcccaaatcacccttttgctctgcaagatattttagcttgcctagcaactctttgatcctagattcaaatggattagtgatagctgaaagcaag |
6838140 |
T |
|
| Q |
301 |
tatttaacctttgatcccaacatatccttgctcttgagttttacatttgtatcaaactcatccaacaattgatctacttcatatacctcatgttttagat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6838139 |
tatttaacctttgatcccaacatatccttgctcttgagttttacatttgtatcaatctcatccaacaattgatctacttcatatacctcatgttttagat |
6838040 |
T |
|
| Q |
401 |
tatcaaaccaattcttcacacgttggttatggtacttctttgtctctgc |
449 |
Q |
| |
|
|||||||||| ||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
6838039 |
tatcaaaccacttcttcacattttggttttggtacttctttgtctctgc |
6837991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 4 - 449
Target Start/End: Original strand, 8472055 - 8472482
Alignment:
| Q |
4 |
cccatcccacccaaaccaactatgctgatagttgatactttgttgtcattgtccttgtaagacagcaaatagttaattatttcttctttttcaccttctc |
103 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||| |||| ||||||| |||||||| |||||||| || |||| ||||||||| |||||||||| |
|
|
| T |
8472055 |
cccatcccaggcaaacccactatgctgatagttgatacttggttgccattgtcgttgtaagaaagcaaatacttgattaattcttctttgtcaccttctc |
8472154 |
T |
|
| Q |
104 |
taccacgtatgtcagattcattcaccaaggatgaagttggcgatctttttgaggattgcaagctaactacaccttcatgactagtgcaacttcttttagt |
203 |
Q |
| |
|
||||||||||| |||||||| ||| || |||| ||||||||||||||| |||||||||| ||||||| ||||||||| ||||| | ||||||| | || |
|
|
| T |
8472155 |
taccacgtatggaagattcatccactaaagatgcagttggcgatcttttcgaggattgcaggctaactgcaccttcataactagggaaacttctctgtgt |
8472254 |
T |
|
| Q |
204 |
caatcccaaatcatccttttgctctgcaagatgttttagcttgcctaacaactctttgatcctagattcaaatggattagtgatagctgaaagcaagtat |
303 |
Q |
| |
|
|||||||| |||||||||| || |||||| ||||||| | ||| | | ||| ||||||||||||||||| ||||| ||| ||||||||| |||| | |
|
|
| T |
8472255 |
taatcccaacacatccttttgatcggcaagaagttttagttcatctagcgaatctctgatcctagattcaaatcgattaatgaaagctgaaaggaagtgt |
8472354 |
T |
|
| Q |
304 |
ttaacctttgatcccaacatatccttgctcttgagttttacatttgtatcaaactcatccaacaattgatctacttcatatacctcatgttttagattat |
403 |
Q |
| |
|
| || |||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8472355 |
tgaa------------------ccttgctctttcgttgtacacttgtatcaaactcatccaacaattgatctacttcatatacctcatgttttagacgat |
8472436 |
T |
|
| Q |
404 |
caaaccaattcttcacacgttggttatggtacttctttgtctctgc |
449 |
Q |
| |
|
||| ||||||||| ||| |||||| |||||||||||||||||||| |
|
|
| T |
8472437 |
caagccaattcttaacattttggttctggtacttctttgtctctgc |
8472482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 301
Target Start/End: Complemental strand, 8568420 - 8568189
Alignment:
| Q |
67 |
agcaaatagttaattatttcttctttttcaccttctctaccacgtatgtcagattcattcaccaaggatgaagttggcgatctttttgaggattgcaagc |
166 |
Q |
| |
|
|||||||| || ||||||| | ||| ||| | ||||||||| |||| |||||||| |||||| || | ||||||| ||||||||||||||| ||| | |
|
|
| T |
8568420 |
agcaaataattgattattttatttttatcatcatctctaccatatatgcaagattcatccaccaaagacgcagttggcaatctttttgaggatttcaatc |
8568321 |
T |
|
| Q |
167 |
taactacaccttcatgactagtgcaacttcttttagtcaatcccaaatcatccttttgctctgcaagatgttttagcttgcctaacaactctttgatcct |
266 |
Q |
| |
|
|||| |||||||| ||||| || ||||| ||||||||| |||||||||| | ||||| ||||||| || ||||||| ||||||||||| |
|
|
| T |
8568320 |
taaccgcaccttca---ctagtacaggctctttggttcaatcccagcacatccttttgatgagcaagcaattttagcgtgtctaacaaatctttgatcct |
8568224 |
T |
|
| Q |
267 |
agattcaaatggattagtgatagctgaaagcaagt |
301 |
Q |
| |
|
|||||||||| ||||||| | | ||||||| |||| |
|
|
| T |
8568223 |
agattcaaatcgattagtaaaacctgaaaggaagt |
8568189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 5250875 - 5250954
Alignment:
| Q |
216 |
atccttttgctctgcaagatgttttagcttgcctaacaactctttgatcctagattcaaatggattagtgatagctgaaa |
295 |
Q |
| |
|
||||||||||| ||||||| || |||||| ||| ||| ||||| ||||||||||||||||||||||||| || ||||| |
|
|
| T |
5250875 |
atccttttgctttgcaagaaattctagcttctctagcaattctttaatcctagattcaaatggattagtgaaagatgaaa |
5250954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 418
Target Start/End: Complemental strand, 6721153 - 6721094
Alignment:
| Q |
359 |
catccaacaattgatctacttcatatacctcatgttttagattatcaaaccaattcttca |
418 |
Q |
| |
|
||||||| | ||| |||||||| |||||||||||||| |||||||||| |||| |||||| |
|
|
| T |
6721153 |
catccaatagttgctctacttcgtatacctcatgtttgagattatcaagccaactcttca |
6721094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 419
Target Start/End: Original strand, 6917962 - 6918008
Alignment:
| Q |
373 |
tctacttcatatacctcatgttttagattatcaaaccaattcttcac |
419 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||| |||||||||||| |
|
|
| T |
6917962 |
tctacttcatatacctcgtgtttgagatcatcaagccaattcttcac |
6918008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 449
Target Start/End: Complemental strand, 8568132 - 8568059
Alignment:
| Q |
376 |
acttcatatacctcatgttttagattatcaaaccaattcttcacacgttggttatggtacttctttgtctctgc |
449 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||| ||||||||| | ||| ||||||| |||||| ||||| |
|
|
| T |
8568132 |
acttcatatacctcatgttttagtttatgaagccagttcttcacatatgtgttttggtactgctttgtttctgc |
8568059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 6572833 - 6572550
Alignment:
| Q |
4 |
cccatcccacccaaaccaactatgctgatagttgatactttgttgtcattgtccttgtaagacagcaaatagttaattatttcttctttttcaccttctc |
103 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||| |||||| ||||| ||||| || ||||||| ||| |||||||||||||| ||||| |||| |
|
|
| T |
6572833 |
cccatcccacccaaacccactatgctgattattgatacttggttgtcgttgtctttgtatgaaagcaaatggttgattatttcttctttctcaccctctc |
6572734 |
T |
|
| Q |
104 |
taccacgtatgtcagattcattcaccaaggatgaagttggcgatctttttgaggattgcaagctaactacaccttcatgactagtgcaacttctttta-- |
201 |
Q |
| |
|
||||| |||| ||||| || ||||| |||| ||||||||||||||||||||||||| ||||||| |||||||| |||| ||||||||| || |
|
|
| T |
6572733 |
taccatatatgcaagatttatccaccagagatgcagttggcgatctttttgaggattgctggctaactgcaccttcaaaactactgcaacttccactacc |
6572634 |
T |
|
| Q |
202 |
-gtcaatcccaaatcatccttttgctctgcaagatgttttagcttgcctaacaactctttgatcctagattcaaatggattagt |
284 |
Q |
| |
|
||||||||||| |||||||||||||| | ||| |||||| ||| | | ||| || |||||||||| |||| || ||||||| |
|
|
| T |
6572633 |
tgtcaatcccaacacatccttttgctctacgagaaattttagtttgtcgagcaaatcattgatcctaggttcatatcgattagt |
6572550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 6572506 - 6572403
Alignment:
| Q |
346 |
tttgtatcaaactcatccaacaattgatctacttcatatacctcatgttttagattatcaaaccaattcttcacacgttggttatggtacttctttgtct |
445 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||| | |||| ||||||| ||||||| |
|
|
| T |
6572506 |
tttgtagcaatctcatccaacaattgatctacttcatatacctcatgttttagacgatcaagccaaatcttcacgtttgggttttggtactgttttgtct |
6572407 |
T |
|
| Q |
446 |
ctgc |
449 |
Q |
| |
|
|||| |
|
|
| T |
6572406 |
ctgc |
6572403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University