View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12493_low_5 (Length: 434)

Name: NF12493_low_5
Description: NF12493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12493_low_5
NF12493_low_5
[»] chr7 (11 HSPs)
chr7 (16-414)||(31202692-31203089)
chr7 (20-251)||(31061979-31062210)
chr7 (16-251)||(31049652-31049887)
chr7 (20-251)||(31162552-31162783)
chr7 (20-251)||(31144728-31144959)
chr7 (20-247)||(31107150-31107377)
chr7 (327-412)||(31145031-31145116)
chr7 (327-412)||(31162855-31162940)
chr7 (327-409)||(31049959-31050041)
chr7 (332-409)||(31107456-31107533)
chr7 (332-411)||(31062450-31062529)
[»] chr5 (2 HSPs)
chr5 (20-123)||(42315247-42315350)
chr5 (23-127)||(37016363-37016467)
[»] chr3 (1 HSPs)
chr3 (23-124)||(24268665-24268766)
[»] chr4 (2 HSPs)
chr4 (16-66)||(42736248-42736298)
chr4 (16-66)||(42768149-42768199)
[»] chr8 (1 HSPs)
chr8 (31-59)||(8132910-8132938)


Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Complemental strand, 31203089 - 31202692
Alignment:
Q  16 acctgtggtcatgatagctgatttaatagctgctggactccaattaggatgctttgttttgataagtcccgcaatgccggcaacatgagggcaagacata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  31203089 acctgtggtcatgatagctgatttaatagctgctggactccaattaggatgcaatgttttgataagtcccgcaatgccggcaacatgagggcaagacata 31202990  T
Q  116 gaagttccttgtagtacattgaatggaaaattgttgcgattgtctgttattaaattagatgcacttgcgtacaacgaataggcagcaagtatgttcacac 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31202989 gaagttccttgtagtacattgaatggaaaattgttgcgattgtctgtttttaaattagatgcacttgcgtacaacgaataggcagcaagtatgttcacac 31202890  T
Q  216 ctggtgcagttacatcaggctgaaacaaaaaacaaattaaataccccattgnnnnnnnnnngacaactaaggaggaccattactatagatagttgattac 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||| ||||||||||||||||||||||||||    
T  31202889 ctggtgcagttacatcaggctgaaacaaaaaacaaattaaataccccattg-aaaaaaaaagacaactaaggaagaccattactatagatagttgattac 31202791  T
Q  316 tagtccatgtatatatacaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccataactggagctggctttcttccatag 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31202790 tagtccatgtatatatacaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccattactggagctggctttcttccatag 31202692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 31061979 - 31062210
Alignment:
Q  20 gtggtcatgatagctgatttaatagctgctggactccaattaggatgctttgttttgataagtcccgcaatgccggcaacatgagggcaagacatagaag 119  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||| | || |||||||||||||||||||||||||    
T  31061979 gtggtcataatagctgatttaatagctgctggactccaattaggatgaagtgttttgataagtccagcagtcccagcaacatgagggcaagacatagaag 31062078  T
Q  120 ttccttgtagtacattgaatggaaaattgttgcgattgtctgttattaaattagatgcacttgcgtacaacgaataggcagcaagtatgttcacacctgg 219  Q
    ||||||| | ||||||||| ||||||     |||||||||||||| ||||||||||||||| ||  |||| |||||||||||||||||||||||||| ||    
T  31062079 ttccttgcattacattgaagggaaaacctcggcgattgtctgttagtaaattagatgcactagcaaacaatgaataggcagcaagtatgttcacaccagg 31062178  T
Q  220 tgcagttacatcaggctgaaacaaaaaacaaa 251  Q
    ||||||||||||||||||||||||||||||||    
T  31062179 tgcagttacatcaggctgaaacaaaaaacaaa 31062210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 31049652 - 31049887
Alignment:
Q  16 acctgtggtcatgatagctgatttaatagctgctggactccaattaggatgctttgttttgataagtcccgcaatgccggcaacatgagggcaagacata 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||| |||| ||||||||||| |||||||||    
T  31049652 acctgtggtcataatagctgatttaatagctgctggactccaattaggatgaagtgttttgataagtccagcagtgccagcaacatgaggacaagacata 31049751  T
Q  116 gaagttccttgtagtacattgaatggaaaattgttgcgattgtctgttattaaattagatgcacttgcgtacaacgaataggcagcaagtatgttcacac 215  Q
    |||||||||||| ||| |||||||||||||      ||||||||||||| |||||||||  |||||||  |||| |||||||||||||||||||||||||    
T  31049752 gaagttccttgttgtatattgaatggaaaacctcgacgattgtctgttactaaattagacacacttgcaaacaatgaataggcagcaagtatgttcacac 31049851  T
Q  216 ctggtgcagttacatcaggctgaaacaaaaaacaaa 251  Q
    | || |||||||||||||||||||||||||||||||    
T  31049852 ccggcgcagttacatcaggctgaaacaaaaaacaaa 31049887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 31162552 - 31162783
Alignment:
Q  20 gtggtcatgatagctgatttaatagctgctggactccaattaggatgctttgttttgataagtcccgcaatgccggcaacatgagggcaagacatagaag 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||| |||| ||||||||||| |||||||||||||    
T  31162552 gtggtcatgatagctgatttaatagctgctggactccaattaggatgaagtgttttgataagtccagcagtgccagcaacatgaggacaagacatagaag 31162651  T
Q  120 ttccttgtagtacattgaatggaaaattgttgcgattgtctgttattaaattagatgcacttgcgtacaacgaataggcagcaagtatgttcacacctgg 219  Q
    |||||||| ||| |||||||||||||      ||||||||||||| |||||||||  |||||||   ||| |||||||||||||||||||||||||| ||    
T  31162652 ttccttgttgtatattgaatggaaaacctcgacgattgtctgttactaaattagacacacttgcaagcaatgaataggcagcaagtatgttcacacccgg 31162751  T
Q  220 tgcagttacatcaggctgaaacaaaaaacaaa 251  Q
     |||||||||||||||||||||||||||||||    
T  31162752 cgcagttacatcaggctgaaacaaaaaacaaa 31162783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 31144728 - 31144959
Alignment:
Q  20 gtggtcatgatagctgatttaatagctgctggactccaattaggatgctttgttttgataagtcccgcaatgccggcaacatgagggcaagacatagaag 119  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||||||| ||| ||||  |||||||||| |||||||||||||    
T  31144728 gtggtcatgatagctgatttaatagctgcaggactccaattaggatgaagtgttttgataagtccagcagtgccaacaacatgaggacaagacatagaag 31144827  T
Q  120 ttccttgtagtacattgaatggaaaattgttgcgattgtctgttattaaattagatgcacttgcgtacaacgaataggcagcaagtatgttcacacctgg 219  Q
    |||||||| ||| |||||||||||||      ||||||||||||| |||||||||  |||||||   ||| |||||||||||||||||||||||||| ||    
T  31144828 ttccttgttgtatattgaatggaaaacctcgacgattgtctgttactaaattagacacacttgcaagcaatgaataggcagcaagtatgttcacacccgg 31144927  T
Q  220 tgcagttacatcaggctgaaacaaaaaacaaa 251  Q
     |||||||||||||||||||||||||||||||    
T  31144928 cgcagttacatcaggctgaaacaaaaaacaaa 31144959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 31107150 - 31107377
Alignment:
Q  20 gtggtcatgatagctgatttaatagctgctggactccaattaggatgctttgttttgataagtcccgcaatgccggcaacatgagggcaagacatagaag 119  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||   ||||||||| | ||| ||| ||||||||||||| || |||||||||||||    
T  31107150 gtggtcattatagccgatttaatagctgctggactccaattaggatgaagtgttttgattaatccagcagtgccggcaacatgtggacaagacatagaag 31107249  T
Q  120 ttccttgtagtacattgaatggaaaattgttgcgattgtctgttattaaattagatgcacttgcgtacaacgaataggcagcaagtatgttcacacctgg 219  Q
    ||||||| | ||||||||||||||||      ||| ||||||||||||||||||||||||||||  |||| ||||||||||| |||||||||||||||||    
T  31107250 ttccttgcattacattgaatggaaaacctcgacgagtgtctgttattaaattagatgcacttgcaaacaatgaataggcagcgagtatgttcacacctgg 31107349  T
Q  220 tgcagttacatcaggctgaaacaaaaaa 247  Q
     ||||||||||||||||||||| |||||    
T  31107350 cgcagttacatcaggctgaaacgaaaaa 31107377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 327 - 412
Target Start/End: Original strand, 31145031 - 31145116
Alignment:
Q  327 tatatacaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccataactggagctggctttcttccat 412  Q
    |||| |||||||||||||  |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31145031 tataaacaccttgagtatatatggttgaactttatttggtcctctagatgagaatgaagccataactggagctggctttcttccat 31145116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 327 - 412
Target Start/End: Original strand, 31162855 - 31162940
Alignment:
Q  327 tatatacaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccataactggagctggctttcttccat 412  Q
    |||| |||||||||||||  |||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31162855 tataaacaccttgagtatatatggttgaacttgatttggtcctctagatgagaatgaagccataactggagctggctttcttccat 31162940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 327 - 409
Target Start/End: Original strand, 31049959 - 31050041
Alignment:
Q  327 tatatacaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccataactggagctggctttcttc 409  Q
    |||| |||||||||||||  ||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31049959 tataaacaccttgagtatatatggctgaacttgatttggtcctctagatgagaatgaagccataactggagctggttttcttc 31050041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 332 - 409
Target Start/End: Original strand, 31107456 - 31107533
Alignment:
Q  332 acaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccataactggagctggctttcttc 409  Q
    ||||||||||||||||||| |||| |||||||||||||||||| ||| | ||||||||||||||||||||||||||||    
T  31107456 acaccttgagtattgatggttgaactttatttggtcctctagaagagtaggaagccataactggagctggctttcttc 31107533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 332 - 411
Target Start/End: Original strand, 31062450 - 31062529
Alignment:
Q  332 acaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccataactggagctggctttcttcca 411  Q
    |||||||||||||  |||| |||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31062450 acaccttgagtatatatggttgaacttgatttggacctctagatgagaatgaagccataactggagctggctttcttcca 31062529  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 42315350 - 42315247
Alignment:
Q  20 gtggtcatgatagctgatttaatagctgctggactccaattaggatgctttgttttgataagtcccgcaatgccggcaacatgagggcaagacatagaag 119  Q
    |||||||| ||||||||||| ||||||||||||||||| ||||||||   |||||||| ||| || || ||||| |  ||||||||||| | ||||||||    
T  42315350 gtggtcataatagctgatttgatagctgctggactccatttaggatgaagtgttttgagaaggcctgctatgccagacacatgagggcatgccatagaag 42315251  T
Q  120 ttcc 123  Q
    ||||    
T  42315250 ttcc 42315247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 37016363 - 37016467
Alignment:
Q  23 gtcatgatagctgatttaatagctgctggactccaattaggatgctttgttttgataagtcccgcaatgccggcaacatgagggcaagacatagaagttc 122  Q
    |||||||| || ||||| || || |||||||||||| |||||||   ||| |||| ||| ||  ||||||| ||||||||||| |||||||| |||||||    
T  37016363 gtcatgatggcagatttgatggcagctggactccaactaggatgaagtgtcttgagaagaccgacaatgccagcaacatgaggacaagacattgaagttc 37016462  T
Q  123 cttgt 127  Q
    |||||    
T  37016463 cttgt 37016467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 24268766 - 24268665
Alignment:
Q  23 gtcatgatagctgatttaatagctgctggactccaattaggatgctttgttttgataagtcccgcaatgccggcaacatgagggcaagacatagaagttc 122  Q
    ||||||||||| ||||||| |||||| ||||||||||||||||   ||||||||| |||  |  ||||| | | |||||||||||| || ||||||||||    
T  24268766 gtcatgatagcagatttaaaagctgcaggactccaattaggataaattgttttgagaagagcaacaatggcagaaacatgagggcatgatatagaagttc 24268667  T
Q  123 ct 124  Q
    ||    
T  24268666 ct 24268665  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 42736298 - 42736248
Alignment:
Q  16 acctgtggtcatgatagctgatttaatagctgctggactccaattaggatg 66  Q
    ||||||||||||||| ||||| || ||||||||||||||||||| ||||||    
T  42736298 acctgtggtcatgattgctgacttgatagctgctggactccaatcaggatg 42736248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 42768149 - 42768199
Alignment:
Q  16 acctgtggtcatgatagctgatttaatagctgctggactccaattaggatg 66  Q
    ||||||||||||||| || || |||||||| ||||||||||||| ||||||    
T  42768149 acctgtggtcatgatcgcggacttaatagcagctggactccaatcaggatg 42768199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 8132910 - 8132938
Alignment:
Q  31 agctgatttaatagctgctggactccaat 59  Q
    |||||||||||||||||||||||||||||    
T  8132910 agctgatttaatagctgctggactccaat 8132938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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